Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2676)	% of Background Sequences with Motif
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-83	-1.914e+02	0.0000	828.0	27.60%	220.0	8.22%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-70	-1.631e+02	0.0000	326.0	10.87%	17.7	0.66%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-66	-1.536e+02	0.0000	633.0	21.10%	153.3	5.73%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-63	-1.464e+02	0.0000	546.0	18.20%	116.4	4.35%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-61	-1.422e+02	0.0000	554.0	18.47%	124.0	4.63%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-59	-1.373e+02	0.0000	1046.0	34.87%	429.6	16.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-56	-1.302e+02	0.0000	597.0	19.90%	159.9	5.97%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-55	-1.279e+02	0.0000	256.0	8.53%	13.9	0.52%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-52	-1.203e+02	0.0000	450.0	15.00%	94.9	3.54%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-49	-1.135e+02	0.0000	407.0	13.57%	80.4	3.00%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-45	-1.052e+02	0.0000	440.0	14.67%	104.2	3.89%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-43	-1.002e+02	0.0000	370.0	12.33%	75.1	2.81%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-33	-7.635e+01	0.0000	349.0	11.63%	89.7	3.35%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-31	-7.226e+01	0.0000	155.0	5.17%	10.7	0.40%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-28	-6.489e+01	0.0000	268.0	8.93%	61.1	2.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-27	-6.433e+01	0.0000	496.0	16.53%	190.9	7.13%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-26	-6.064e+01	0.0000	225.0	7.50%	45.5	1.70%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-25	-5.980e+01	0.0000	203.0	6.77%	36.7	1.37%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-25	-5.887e+01	0.0000	257.0	8.57%	62.9	2.35%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-24	-5.697e+01	0.0000	176.0	5.87%	27.9	1.04%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-24	-5.599e+01	0.0000	211.0	7.03%	43.3	1.62%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-18	-4.262e+01	0.0000	174.0	5.80%	39.5	1.47%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-17	-3.980e+01	0.0000	188.0	6.27%	49.4	1.85%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-17	-3.958e+01	0.0000	67.0	2.23%	1.7	0.06%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-14	-3.231e+01	0.0000	185.0	6.17%	57.5	2.15%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-13	-3.144e+01	0.0000	104.0	3.47%	18.7	0.70%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-11	-2.567e+01	0.0000	146.0	4.87%	45.9	1.72%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-11	-2.551e+01	0.0000	174.0	5.80%	61.8	2.31%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-10	-2.519e+01	0.0000	64.0	2.13%	7.9	0.29%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-10	-2.480e+01	0.0000	212.0	7.07%	85.7	3.20%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-10	-2.321e+01	0.0000	152.0	5.07%	52.0	1.94%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-9	-2.236e+01	0.0000	217.0	7.23%	93.6	3.50%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-9	-2.192e+01	0.0000	157.0	5.23%	57.7	2.16%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-9	-2.084e+01	0.0000	235.0	7.83%	108.9	4.07%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-8	-1.931e+01	0.0000	237.0	7.90%	113.2	4.23%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-8	-1.873e+01	0.0000	352.0	11.73%	195.7	7.31%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-7	-1.662e+01	0.0000	95.0	3.17%	30.5	1.14%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-7	-1.661e+01	0.0000	80.0	2.67%	22.5	0.84%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-7	-1.660e+01	0.0000	168.0	5.60%	74.1	2.77%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-7	-1.614e+01	0.0000	71.0	2.37%	18.4	0.69%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-6	-1.533e+01	0.0000	73.0	2.43%	20.4	0.76%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-5	-1.259e+01	0.0000	68.0	2.27%	21.2	0.79%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-5	-1.254e+01	0.0000	210.0	7.00%	113.2	4.23%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-5	-1.203e+01	0.0001	61.0	2.03%	18.4	0.69%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-5	-1.190e+01	0.0001	136.0	4.53%	64.1	2.40%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-4	-1.123e+01	0.0001	2917.0	97.23%	2544.3	95.05%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-1.102e+01	0.0001	45.0	1.50%	11.7	0.44%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-1.098e+01	0.0001	69.0	2.30%	24.5	0.92%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-1.057e+01	0.0002	122.0	4.07%	58.4	2.18%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-4	-1.016e+01	0.0003	43.0	1.43%	12.0	0.45%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-4	-9.961e+00	0.0004	52.0	1.73%	16.6	0.62%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-9.578e+00	0.0005	51.0	1.70%	16.4	0.61%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-4	-9.535e+00	0.0005	234.0	7.80%	141.7	5.29%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-4	-9.507e+00	0.0005	109.0	3.63%	52.0	1.94%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-9.479e+00	0.0005	63.0	2.10%	23.9	0.89%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-4	-9.224e+00	0.0007	130.0	4.33%	67.9	2.54%
SeqBias: A/T bias	WWWWWWWWWW	1e-3	-8.773e+00	0.0011	2393.0	79.77%	2027.7	75.75%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-8.455e+00	0.0014	102.0	3.40%	50.7	1.89%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-8.323e+00	0.0016	747.0	24.90%	561.9	20.99%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-8.137e+00	0.0019	59.0	1.97%	23.4	0.87%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-8.095e+00	0.0019	105.0	3.50%	53.8	2.01%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-8.040e+00	0.0020	28.0	0.93%	6.0	0.23%
Tal1	CATCTG	1e-3	-7.845e+00	0.0024	301.0	10.03%	200.9	7.51%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-3	-7.427e+00	0.0036	71.0	2.37%	32.8	1.22%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-7.422e+00	0.0036	108.0	3.60%	57.9	2.16%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-7.001e+00	0.0053	37.0	1.23%	12.7	0.47%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-6.856e+00	0.0061	114.0	3.80%	63.9	2.39%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-6.618e+00	0.0076	62.0	2.07%	28.7	1.07%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-2	-6.319e+00	0.0101	67.0	2.23%	32.4	1.21%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-5.845e+00	0.0160	74.0	2.47%	38.8	1.45%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-5.816e+00	0.0162	98.0	3.27%	55.6	2.08%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.799e+00	0.0163	32.0	1.07%	11.5	0.43%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.717e+00	0.0174	287.0	9.57%	201.6	7.53%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.490e+00	0.0216	162.0	5.40%	104.2	3.89%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-5.199e+00	0.0285	11.0	0.37%	2.0	0.07%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-5.106e+00	0.0309	49.0	1.63%	23.4	0.87%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-5.105e+00	0.0309	8.0	0.27%	0.0	0.00%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-4.605e+00	0.0496	35.0	1.17%	15.5	0.58%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-4.474e+00	0.0558	502.0	16.73%	388.9	14.53%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-1	-4.471e+00	0.0558	33.0	1.10%	14.1	0.53%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-4.464e+00	0.0558	127.0	4.23%	82.2	3.07%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-4.357e+00	0.0605	84.0	2.80%	50.1	1.87%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-4.301e+00	0.0632	34.0	1.13%	15.8	0.59%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-4.205e+00	0.0688	29.0	0.97%	12.6	0.47%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-4.172e+00	0.0702	103.0	3.43%	65.7	2.45%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-4.075e+00	0.0765	48.0	1.60%	25.5	0.95%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.978e+00	0.0833	13.0	0.43%	3.5	0.13%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.851e+00	0.0935	80.0	2.67%	49.4	1.85%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.823e+00	0.0951	54.0	1.80%	30.6	1.14%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-1	-3.792e+00	0.0970	285.0	9.50%	213.5	7.98%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.766e+00	0.0984	339.0	11.30%	258.8	9.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.719e+00	0.1020	99.0	3.30%	64.5	2.41%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-3.719e+00	0.1020	454.0	15.13%	355.4	13.28%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.717e+00	0.1020	32.0	1.07%	15.1	0.56%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-1	-3.576e+00	0.1141	102.0	3.40%	67.4	2.52%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.528e+00	0.1184	12.0	0.40%	3.4	0.13%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-1	-3.423e+00	0.1301	17.0	0.57%	6.9	0.26%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.419e+00	0.1301	101.0	3.37%	67.3	2.52%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.338e+00	0.1389	707.0	23.57%	576.2	21.53%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.314e+00	0.1408	152.0	5.07%	108.7	4.06%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-1	-3.247e+00	0.1490	144.0	4.80%	102.5	3.83%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-3.229e+00	0.1502	66.0	2.20%	41.8	1.56%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.226e+00	0.1502	43.0	1.43%	24.1	0.90%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.173e+00	0.1558	162.0	5.40%	117.1	4.38%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.076e+00	0.1702	171.0	5.70%	125.7	4.70%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-3.064e+00	0.1705	281.0	9.37%	216.4	8.09%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-1	-3.018e+00	0.1769	9.0	0.30%	2.7	0.10%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.017e+00	0.1769	224.0	7.47%	169.5	6.33%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.007e+00	0.1769	7.0	0.23%	1.3	0.05%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.952e+00	0.1838	118.0	3.93%	83.8	3.13%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.858e+00	0.2001	17.0	0.57%	7.9	0.29%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.855e+00	0.2001	106.0	3.53%	74.9	2.80%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.842e+00	0.2001	48.0	1.60%	29.9	1.12%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.710e+00	0.2260	15.0	0.50%	6.2	0.23%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-2.687e+00	0.2292	18.0	0.60%	8.5	0.32%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.666e+00	0.2319	10.0	0.33%	3.2	0.12%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-2.608e+00	0.2436	32.0	1.07%	18.9	0.71%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-2.603e+00	0.2436	163.0	5.43%	122.7	4.58%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.566e+00	0.2500	159.0	5.30%	119.2	4.45%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.551e+00	0.2514	4.0	0.13%	0.8	0.03%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.457e+00	0.2742	46.0	1.53%	30.0	1.12%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.433e+00	0.2785	131.0	4.37%	97.1	3.63%
SeqBias: CG bias	SSSSSSSSSS	1e-1	-2.432e+00	0.2785	1109.0	36.97%	942.1	35.19%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.423e+00	0.2785	137.0	4.57%	102.7	3.84%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.421e+00	0.2785	94.0	3.13%	67.8	2.53%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.373e+00	0.2839	14.0	0.47%	7.0	0.26%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.373e+00	0.2839	14.0	0.47%	6.1	0.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.370e+00	0.2839	117.0	3.90%	86.7	3.24%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.349e+00	0.2863	86.0	2.87%	61.8	2.31%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.330e+00	0.2897	62.0	2.07%	42.5	1.59%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.306e+00	0.2943	36.0	1.20%	22.5	0.84%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.241e+00	0.3117	163.0	5.43%	125.1	4.67%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.142e+00	0.3416	530.0	17.67%	440.0	16.44%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.111e+00	0.3445	7.0	0.23%	2.7	0.10%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.111e+00	0.3445	7.0	0.23%	2.3	0.09%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.111e+00	0.3445	7.0	0.23%	2.5	0.09%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.091e+00	0.3492	84.0	2.80%	61.2	2.29%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.089e+00	0.3492	16.0	0.53%	8.9	0.33%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.044e+00	0.3607	10.0	0.33%	4.5	0.17%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.022e+00	0.3661	24.0	0.80%	14.2	0.53%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.978e+00	0.3797	5.0	0.17%	1.8	0.07%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.962e+00	0.3832	47.0	1.57%	32.6	1.22%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.956e+00	0.3832	52.0	1.73%	36.5	1.37%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.922e+00	0.3933	369.0	12.30%	304.6	11.38%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.913e+00	0.3933	3.0	0.10%	0.0	0.00%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.913e+00	0.3933	3.0	0.10%	0.6	0.02%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.898e+00	0.3944	97.0	3.23%	73.9	2.76%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.879e+00	0.3994	11.0	0.37%	5.1	0.19%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.879e+00	0.3994	26.0	0.87%	16.7	0.62%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.875e+00	0.3994	98.0	3.27%	75.0	2.80%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.822e+00	0.4142	83.0	2.77%	62.8	2.35%
SeqBias: CA-repeat	CACACACACA	1e0	-1.817e+00	0.4142	725.0	24.17%	617.0	23.05%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.786e+00	0.4239	32.0	1.07%	21.7	0.81%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.739e+00	0.4416	53.0	1.77%	38.2	1.43%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.717e+00	0.4456	16.0	0.53%	9.7	0.36%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.717e+00	0.4456	16.0	0.53%	9.6	0.36%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.704e+00	0.4484	29.0	0.97%	20.0	0.75%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.697e+00	0.4486	9.0	0.30%	5.0	0.19%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.643e+00	0.4708	79.0	2.63%	60.9	2.28%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.640e+00	0.4708	13.0	0.43%	7.9	0.29%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.599e+00	0.4857	75.0	2.50%	57.9	2.16%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.593e+00	0.4857	193.0	6.43%	157.5	5.89%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.581e+00	0.4887	146.0	4.87%	117.2	4.38%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.556e+00	0.4977	48.0	1.60%	35.7	1.33%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.544e+00	0.5008	54.0	1.80%	40.2	1.50%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.498e+00	0.5211	159.0	5.30%	129.0	4.82%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.491e+00	0.5216	4.0	0.13%	1.6	0.06%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.472e+00	0.5286	15.0	0.50%	9.3	0.35%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.454e+00	0.5350	82.0	2.73%	64.1	2.40%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.437e+00	0.5412	109.0	3.63%	87.8	3.28%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.422e+00	0.5457	47.0	1.57%	35.3	1.32%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.403e+00	0.5531	118.0	3.93%	95.4	3.57%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.378e+00	0.5637	228.0	7.60%	190.1	7.10%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.370e+00	0.5652	55.0	1.83%	42.5	1.59%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.351e+00	0.5727	108.0	3.60%	87.7	3.28%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.319e+00	0.5880	70.0	2.33%	55.7	2.08%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.313e+00	0.5880	28.0	0.93%	20.3	0.76%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.305e+00	0.5897	13.0	0.43%	8.7	0.32%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.304e+00	0.5897	58.0	1.93%	45.4	1.70%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.293e+00	0.5901	18.0	0.60%	12.2	0.46%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.288e+00	0.5901	5.0	0.17%	2.5	0.09%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.279e+00	0.5921	29.0	0.97%	21.0	0.79%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.275e+00	0.5921	2.0	0.07%	0.4	0.02%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.275e+00	0.5921	2.0	0.07%	0.0	0.00%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.229e+00	0.6121	110.0	3.67%	90.1	3.37%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.198e+00	0.6277	91.0	3.03%	74.1	2.77%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.169e+00	0.6426	86.0	2.87%	71.0	2.65%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.161e+00	0.6444	6.0	0.20%	3.5	0.13%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.160e+00	0.6444	2934.0	97.80%	2612.0	97.58%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.159e+00	0.6444	33.0	1.10%	25.2	0.94%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.158e+00	0.6444	27.0	0.90%	20.4	0.76%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.132e+00	0.6465	11.0	0.37%	7.6	0.28%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.132e+00	0.6465	11.0	0.37%	7.4	0.28%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.103e+00	0.6622	167.0	5.57%	141.7	5.29%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.078e+00	0.6753	12.0	0.40%	8.5	0.32%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.073e+00	0.6754	7.0	0.23%	4.9	0.18%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.066e+00	0.6754	24.0	0.80%	18.8	0.70%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.066e+00	0.6754	24.0	0.80%	18.8	0.70%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.064e+00	0.6754	37.0	1.23%	30.0	1.12%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.064e+00	0.6754	18.0	0.60%	13.2	0.49%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.043e+00	0.6786	38.0	1.27%	30.4	1.14%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.022e+00	0.6892	46.0	1.53%	37.4	1.40%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.874e-01	0.7102	27.0	0.90%	21.3	0.80%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.645e-01	0.7231	28.0	0.93%	22.1	0.82%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.571e-01	0.7250	50.0	1.67%	41.9	1.56%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-9.562e-01	0.7250	15.0	0.50%	11.5	0.43%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.521e-01	0.7250	9.0	0.30%	6.7	0.25%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-9.505e-01	0.7250	137.0	4.57%	117.6	4.39%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-9.429e-01	0.7250	29.0	0.97%	23.4	0.88%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.347e-01	0.7250	44.0	1.47%	36.0	1.35%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.198e-01	0.7311	4.0	0.13%	2.6	0.10%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-8.959e-01	0.7452	17.0	0.57%	13.2	0.49%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.878e-01	0.7478	87.0	2.90%	74.4	2.78%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.867e-01	0.7478	79.0	2.63%	67.7	2.53%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.659e-01	0.7572	131.0	4.37%	113.6	4.24%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-8.504e-01	0.7654	5.0	0.17%	3.3	0.12%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-8.296e-01	0.7780	214.0	7.13%	187.5	7.01%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.244e-01	0.7785	52.0	1.73%	44.8	1.67%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.206e-01	0.7785	28.0	0.93%	23.1	0.86%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-8.061e-01	0.7856	37.0	1.23%	31.7	1.18%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.854e-01	0.7948	22.0	0.73%	18.6	0.69%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.854e-01	0.7948	22.0	0.73%	18.4	0.69%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.520e-01	0.8144	94.0	3.13%	82.8	3.09%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-7.520e-01	0.8144	94.0	3.13%	82.3	3.08%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.324e-01	0.8269	8.0	0.27%	6.3	0.24%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.269e-01	0.8278	371.0	12.37%	329.6	12.31%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-7.068e-01	0.8409	18.0	0.60%	15.7	0.59%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.864e-01	0.8545	38.0	1.27%	33.3	1.24%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.844e-01	0.8545	10.0	0.33%	8.6	0.32%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.839e-01	0.8545	206.0	6.87%	183.4	6.85%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.800e-01	0.8545	48.0	1.60%	42.0	1.57%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.649e-01	0.8580	11.0	0.37%	9.6	0.36%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.622e-01	0.8580	21.0	0.70%	18.7	0.70%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.590e-01	0.8580	31.0	1.03%	27.1	1.01%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.549e-01	0.8580	184.0	6.13%	164.4	6.14%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.478e-01	0.8580	138.0	4.60%	123.2	4.60%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.376e-01	0.8580	1.0	0.03%	0.4	0.02%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.376e-01	0.8580	1.0	0.03%	0.0	0.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-6.376e-01	0.8580	1.0	0.03%	0.8	0.03%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.376e-01	0.8580	1.0	0.03%	0.3	0.01%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.349e-01	0.8580	63.0	2.10%	56.6	2.11%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.270e-01	0.8580	142.0	4.73%	127.1	4.75%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.185e-01	0.8581	35.0	1.17%	31.8	1.19%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.145e-01	0.8581	241.0	8.03%	216.3	8.08%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-5.983e-01	0.8684	58.0	1.93%	52.2	1.95%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.811e-01	0.8799	50.0	1.67%	45.3	1.69%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.621e-01	0.8931	5.0	0.17%	4.8	0.18%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.417e-01	0.9078	21.0	0.70%	19.7	0.73%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.349e-01	0.9103	68.0	2.27%	62.4	2.33%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-5.332e-01	0.9103	22.0	0.73%	20.9	0.78%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.203e-01	0.9164	48.0	1.60%	44.6	1.67%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-5.199e-01	0.9164	9.0	0.30%	8.6	0.32%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.199e-01	0.9164	9.0	0.30%	8.6	0.32%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.812e-01	0.9416	14.0	0.47%	13.6	0.51%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-4.591e-01	0.9589	278.0	9.27%	254.9	9.52%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.525e-01	0.9615	48.0	1.60%	45.4	1.70%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.204e-01	0.9890	25.0	0.83%	24.7	0.92%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.042e-01	1.0000	134.0	4.47%	125.4	4.68%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-3.938e-01	1.0000	2483.0	82.77%	2226.7	83.18%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.785e-01	1.0000	8.0	0.27%	8.9	0.33%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.773e-01	1.0000	7.0	0.23%	7.2	0.27%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-3.770e-01	1.0000	11.0	0.37%	11.1	0.42%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.755e-01	1.0000	12.0	0.40%	12.8	0.48%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.623e-01	1.0000	18.0	0.60%	18.2	0.68%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.549e-01	1.0000	199.0	6.63%	186.4	6.96%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.490e-01	1.0000	178.0	5.93%	167.4	6.25%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.260e-01	1.0000	434.0	14.47%	401.7	15.01%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.151e-01	1.0000	156.0	5.20%	148.5	5.55%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.145e-01	1.0000	37.0	1.23%	37.3	1.39%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-3.136e-01	1.0000	452.0	15.07%	418.3	15.63%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.123e-01	1.0000	104.0	3.47%	100.8	3.77%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-2.969e-01	1.0000	589.0	19.63%	543.9	20.32%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.821e-01	1.0000	23.0	0.77%	24.5	0.91%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.777e-01	1.0000	27.0	0.90%	28.2	1.05%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.766e-01	1.0000	10.0	0.33%	11.4	0.43%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-2.675e-01	1.0000	95.0	3.17%	93.7	3.50%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.656e-01	1.0000	96.0	3.20%	94.1	3.51%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.522e-01	1.0000	6.0	0.20%	7.9	0.30%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.402e-01	1.0000	197.0	6.57%	189.1	7.06%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.261e-01	1.0000	24.0	0.80%	26.5	0.99%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.260e-01	1.0000	26.0	0.87%	28.4	1.06%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.242e-01	1.0000	4.0	0.13%	5.4	0.20%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.137e-01	1.0000	45.0	1.50%	47.9	1.79%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.013e-01	1.0000	3.0	0.10%	4.4	0.17%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.835e-01	1.0000	31.0	1.03%	34.9	1.31%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.824e-01	1.0000	27.0	0.90%	30.7	1.15%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.783e-01	1.0000	7.0	0.23%	10.0	0.37%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.783e-01	1.0000	7.0	0.23%	9.0	0.34%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.677e-01	1.0000	6.0	0.20%	8.8	0.33%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.646e-01	1.0000	15.0	0.50%	18.7	0.70%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.555e-01	1.0000	255.0	8.50%	248.1	9.27%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.545e-01	1.0000	5.0	0.17%	7.6	0.29%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.545e-01	1.0000	5.0	0.17%	7.4	0.28%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.485e-01	1.0000	30.0	1.00%	34.0	1.27%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.482e-01	1.0000	154.0	5.13%	154.2	5.76%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.479e-01	1.0000	56.0	1.87%	60.2	2.25%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.467e-01	1.0000	265.0	8.83%	258.9	9.67%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.452e-01	1.0000	26.0	0.87%	30.9	1.15%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.327e-01	1.0000	268.0	8.93%	263.0	9.82%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.250e-01	1.0000	40.0	1.33%	45.5	1.70%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.196e-01	1.0000	14.0	0.47%	18.1	0.68%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.166e-01	1.0000	3.0	0.10%	5.6	0.21%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.166e-01	1.0000	3.0	0.10%	5.4	0.20%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.112e-01	1.0000	12.0	0.40%	16.3	0.61%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.112e-01	1.0000	12.0	0.40%	16.3	0.61%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.106e-01	1.0000	1.0	0.03%	2.5	0.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.106e-01	1.0000	1.0	0.03%	3.0	0.11%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.099e-01	1.0000	127.0	4.23%	131.7	4.92%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.049e-01	1.0000	47.0	1.57%	53.8	2.01%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.042e-01	1.0000	44.0	1.47%	50.8	1.90%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.034e-01	1.0000	251.0	8.37%	249.3	9.31%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.008e-01	1.0000	10.0	0.33%	14.5	0.54%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.854e-02	1.0000	2.0	0.07%	4.4	0.16%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-8.854e-02	1.0000	2.0	0.07%	4.6	0.17%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.768e-02	1.0000	8.0	0.27%	12.3	0.46%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-8.023e-02	1.0000	732.0	24.40%	696.6	26.02%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.563e-02	1.0000	30.0	1.00%	37.8	1.41%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.361e-02	1.0000	186.0	6.20%	191.4	7.15%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-7.166e-02	1.0000	2879.0	95.97%	2587.5	96.66%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.112e-02	1.0000	6.0	0.20%	10.5	0.39%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.866e-02	1.0000	47.0	1.57%	57.0	2.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.649e-02	1.0000	12.0	0.40%	18.5	0.69%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.237e-02	1.0000	7.0	0.23%	12.4	0.46%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.237e-02	1.0000	7.0	0.23%	12.4	0.46%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-5.061e-02	1.0000	1.0	0.03%	3.1	0.12%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.587e-02	1.0000	115.0	3.83%	126.2	4.72%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.919e-02	1.0000	17.0	0.57%	25.1	0.94%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.809e-02	1.0000	71.0	2.37%	83.6	3.12%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-3.796e-02	1.0000	23.0	0.77%	32.4	1.21%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.789e-02	1.0000	3.0	0.10%	7.8	0.29%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.789e-02	1.0000	3.0	0.10%	7.9	0.29%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.576e-02	1.0000	60.0	2.00%	72.4	2.71%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.048e-02	1.0000	234.0	7.80%	245.6	9.17%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.920e-02	1.0000	9.0	0.30%	16.5	0.62%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.913e-02	1.0000	97.0	3.23%	111.4	4.16%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.823e-02	1.0000	56.0	1.87%	69.2	2.58%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.467e-02	1.0000	15.0	0.50%	24.6	0.92%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.455e-02	1.0000	2.0	0.07%	6.8	0.25%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.373e-02	1.0000	85.0	2.83%	101.0	3.77%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.334e-02	1.0000	667.0	22.23%	654.5	24.45%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.230e-02	1.0000	415.0	13.83%	420.0	15.69%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.145e-02	1.0000	69.0	2.30%	85.0	3.17%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-2.123e-02	1.0000	2841.0	94.70%	2565.0	95.82%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-2.122e-02	1.0000	3.0	0.10%	8.1	0.30%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.107e-02	1.0000	100.0	3.33%	116.7	4.36%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.046e-02	1.0000	64.0	2.13%	79.4	2.96%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.893e-02	1.0000	27.0	0.90%	39.2	1.46%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.873e-02	1.0000	12.0	0.40%	21.6	0.81%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.807e-02	1.0000	217.0	7.23%	233.1	8.71%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.463e-02	1.0000	95.0	3.17%	113.5	4.24%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.416e-02	1.0000	27.0	0.90%	40.4	1.51%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.151e-02	1.0000	122.0	4.07%	142.2	5.31%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.027e-02	1.0000	156.0	5.20%	177.7	6.64%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.010e-02	1.0000	137.0	4.57%	158.4	5.92%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.776e-03	1.0000	5.0	0.17%	14.7	0.55%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.699e-03	1.0000	29.0	0.97%	46.4	1.73%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.391e-03	1.0000	2.0	0.07%	9.6	0.36%
SeqBias: TA-repeat	TATATATATA	1e0	-2.634e-03	1.0000	398.0	13.27%	424.0	15.84%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.744e-03	1.0000	74.0	2.47%	101.8	3.80%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.684e-03	1.0000	49.0	1.63%	74.0	2.76%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.666e-03	1.0000	206.0	6.87%	239.2	8.94%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.143e-03	1.0000	1.0	0.03%	8.2	0.31%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-7.950e-04	1.0000	51.0	1.70%	78.7	2.94%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.660e-04	1.0000	224.0	7.47%	262.9	9.82%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.630e-04	1.0000	33.0	1.10%	58.2	2.18%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-3.770e-04	1.0000	48.0	1.60%	77.6	2.90%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.780e-04	1.0000	9.0	0.30%	26.8	1.00%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-4.800e-05	1.0000	88.0	2.93%	131.8	4.92%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.700e-05	1.0000	101.0	3.37%	148.3	5.54%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.100e-05	1.0000	25.0	0.83%	57.1	2.13%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-4.000e-06	1.0000	24.0	0.80%	58.8	2.20%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.000e-06	1.0000	179.0	5.97%	246.0	9.19%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-0.000e+00	1.0000	217.0	7.23%	300.8	11.24%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	262.0	8.73%	362.2	13.53%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.6	0.10%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	0.0	0.00%	1.8	0.07%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.04%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	3000.0	100.00%	2676.9	100.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	4.3	0.16%