Homer Known Motif Enrichment Results (/Volumes/Macintosh_HD/Users/zhengao/bio/Struc_features/in_data/chip-seq/1_narowPeaks/more/data/9_homer_out/49/CI/)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 3000, Total Background Sequences = 2723
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer1e-299-6.893e+020.00001403.046.77%153.65.64%motif file (matrix) pdf
2Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer1e-225-5.188e+020.00001090.036.33%108.84.00%motif file (matrix) pdf
3Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer1e-189-4.362e+020.0000960.032.00%100.23.68%motif file (matrix) pdf
4Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer1e-169-3.910e+020.0000719.023.97%36.11.33%motif file (matrix) pdf
5Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer1e-77-1.788e+020.0000407.013.57%36.81.35%motif file (matrix) pdf
6BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer1e-75-1.746e+020.0000420.014.00%43.41.59%motif file (matrix) pdf
7Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer1e-72-1.661e+020.0000369.012.30%30.01.10%motif file (matrix) pdf
8AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-67-1.552e+020.0000404.013.47%49.51.82%motif file (matrix) pdf
9SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer1e-52-1.199e+020.0000315.010.50%38.61.42%motif file (matrix) pdf
10Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer1e-46-1.065e+020.0000229.07.63%16.20.60%motif file (matrix) pdf
11RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer1e-44-1.021e+020.0000394.013.13%87.13.20%motif file (matrix) pdf
12SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer1e-43-1.008e+020.0000634.021.13%223.58.21%motif file (matrix) pdf
13Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-40-9.291e+010.0000183.06.10%9.50.35%motif file (matrix) pdf
14RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer1e-40-9.224e+010.0000313.010.43%58.72.16%motif file (matrix) pdf
15RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer1e-36-8.418e+010.0000327.010.90%72.72.67%motif file (matrix) pdf
16Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-31-7.264e+010.0000295.09.83%68.72.52%motif file (matrix) pdf
17RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer1e-29-6.842e+010.0000278.09.27%64.22.36%motif file (matrix) pdf
18PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-29-6.797e+010.0000368.012.27%112.84.14%motif file (matrix) pdf
19PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer1e-29-6.682e+010.0000171.05.70%19.70.72%motif file (matrix) pdf
20ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer1e-28-6.654e+010.0000272.09.07%63.42.33%motif file (matrix) pdf
21Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)1e-28-6.614e+010.0000244.08.13%50.21.84%motif file (matrix) pdf
22ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-26-6.143e+010.0000340.011.33%105.13.86%motif file (matrix) pdf
23PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-25-5.795e+010.0000178.05.93%28.71.06%motif file (matrix) pdf
24bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer1e-24-5.544e+010.0000228.07.60%53.51.97%motif file (matrix) pdf
25ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer1e-23-5.437e+010.0000314.010.47%100.83.70%motif file (matrix) pdf
26IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer1e-23-5.404e+010.0000225.07.50%54.01.98%motif file (matrix) pdf
27Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer1e-23-5.354e+010.000097.03.23%3.30.12%motif file (matrix) pdf
28GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer1e-21-4.855e+010.0000215.07.17%54.72.01%motif file (matrix) pdf
29SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer1e-18-4.326e+010.0000128.04.27%19.20.71%motif file (matrix) pdf
30Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer1e-18-4.304e+010.0000112.03.73%13.30.49%motif file (matrix) pdf
31IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer1e-17-4.062e+010.0000118.03.93%17.50.64%motif file (matrix) pdf
32IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer1e-17-4.021e+010.0000127.04.23%21.20.78%motif file (matrix) pdf
33CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer1e-16-3.890e+010.0000149.04.97%32.91.21%motif file (matrix) pdf
34EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer1e-16-3.831e+010.0000182.06.07%49.51.82%motif file (matrix) pdf
35ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer1e-16-3.741e+010.0000178.05.93%48.21.77%motif file (matrix) pdf
36IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer1e-15-3.612e+010.000094.03.13%11.20.41%motif file (matrix) pdf
37ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer1e-14-3.305e+010.0000115.03.83%22.10.81%motif file (matrix) pdf
38Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer1e-14-3.293e+010.0000132.04.40%30.71.13%motif file (matrix) pdf
39Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer1e-14-3.247e+010.0000131.04.37%30.61.12%motif file (matrix) pdf
40Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer1e-13-3.195e+010.0000136.04.53%33.71.24%motif file (matrix) pdf
41EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer1e-13-3.150e+010.0000137.04.57%34.51.27%motif file (matrix) pdf
42EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer1e-13-3.117e+010.0000244.08.13%95.03.49%motif file (matrix) pdf
43ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer1e-12-2.852e+010.000060.02.00%4.90.18%motif file (matrix) pdf
44ETS(ETS)/Promoter/Homer1e-12-2.813e+010.000089.02.97%15.60.57%motif file (matrix) pdf
45SeqBias: A/T bias1e-11-2.584e+010.00002604.086.80%2181.880.14%motif file (matrix) pdf
46NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer1e-11-2.558e+010.0000129.04.30%37.51.38%motif file (matrix) pdf
47ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer1e-10-2.426e+010.000046.01.53%2.80.10%motif file (matrix) pdf
48Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer1e-9-2.269e+010.000035.01.17%0.50.02%motif file (matrix) pdf
49PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer1e-9-2.235e+010.0000161.05.37%60.62.23%motif file (matrix) pdf
50Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer1e-9-2.139e+010.000033.01.10%0.50.02%motif file (matrix) pdf
51NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer1e-7-1.692e+010.000037.01.23%3.00.11%motif file (matrix) pdf
52BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer1e-7-1.671e+010.000030.01.00%1.90.07%motif file (matrix) pdf
53SeqBias: polyA-repeat1e-7-1.636e+010.00002908.096.93%2560.894.06%motif file (matrix) pdf
54Initiator/Drosophila-Promoters/Homer1e-6-1.610e+010.0000481.016.03%307.311.29%motif file (matrix) pdf
55MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-6-1.591e+010.0000104.03.47%37.01.36%motif file (matrix) pdf
56SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer1e-6-1.587e+010.0000143.04.77%61.32.25%motif file (matrix) pdf
57Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-6-1.543e+010.0000140.04.67%60.72.23%motif file (matrix) pdf
58MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-6-1.531e+010.0000152.05.07%68.72.52%motif file (matrix) pdf
59Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-6-1.440e+010.0000108.03.60%42.71.57%motif file (matrix) pdf
60Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer1e-5-1.355e+010.000050.01.67%11.10.41%motif file (matrix) pdf
61Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-5-1.339e+010.0000169.05.63%84.93.12%motif file (matrix) pdf
62Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer1e-5-1.314e+010.000061.02.03%17.40.64%motif file (matrix) pdf
63Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer1e-5-1.288e+010.0000136.04.53%63.62.33%motif file (matrix) pdf
64KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer1e-5-1.270e+010.0000185.06.17%97.43.58%motif file (matrix) pdf
65c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-5-1.243e+010.000063.02.10%19.90.73%motif file (matrix) pdf
66NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer1e-5-1.179e+010.000033.01.10%5.50.20%motif file (matrix) pdf
67MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer1e-5-1.176e+010.000044.01.47%10.70.39%motif file (matrix) pdf
68Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer1e-4-1.123e+010.000195.03.17%40.61.49%motif file (matrix) pdf
69Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-4-1.120e+010.0001194.06.47%108.83.99%motif file (matrix) pdf
70Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer1e-4-1.015e+010.000274.02.47%29.61.09%motif file (matrix) pdf
71Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer1e-4-9.949e+000.0003281.09.37%178.96.57%motif file (matrix) pdf
72Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-4-9.620e+000.0004348.011.60%232.58.54%motif file (matrix) pdf
73Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer1e-4-9.317e+000.0005127.04.23%66.22.43%motif file (matrix) pdf
74Sp1(Zf)/Promoter/Homer1e-3-8.877e+000.000720.00.67%2.90.11%motif file (matrix) pdf
75Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer1e-3-8.782e+000.000841.01.37%12.30.45%motif file (matrix) pdf
76CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer1e-3-8.534e+000.0010128.04.27%69.12.54%motif file (matrix) pdf
77E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-3-7.966e+000.0017197.06.57%122.64.50%motif file (matrix) pdf
78Unknown1/Arabidopsis-Promoters/Homer1e-3-7.796e+000.002025.00.83%5.80.21%motif file (matrix) pdf
79RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer1e-3-7.759e+000.002112.00.40%0.70.03%motif file (matrix) pdf
80HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer1e-3-7.572e+000.0025107.03.57%57.22.10%motif file (matrix) pdf
81JunD(bZIP)/K562-JunD-ChIP-Seq/Homer1e-3-7.525e+000.002620.00.67%3.40.12%motif file (matrix) pdf
82Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer1e-3-7.306e+000.003254.01.80%22.20.82%motif file (matrix) pdf
83NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer1e-3-7.295e+000.003226.00.87%6.10.23%motif file (matrix) pdf
84MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer1e-3-7.243e+000.0033296.09.87%203.37.47%motif file (matrix) pdf
85SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-3-7.160e+000.0035575.019.17%434.915.97%motif file (matrix) pdf
86Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer1e-3-6.922e+000.004448.01.60%19.50.72%motif file (matrix) pdf
87CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer1e-2-6.899e+000.004521.00.70%4.10.15%motif file (matrix) pdf
88Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer1e-2-6.778e+000.005041.01.37%15.00.55%motif file (matrix) pdf
89Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-2-6.585e+000.0060126.04.20%74.92.75%motif file (matrix) pdf
90PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer1e-2-6.454e+000.006859.01.97%27.61.01%motif file (matrix) pdf
91PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer1e-2-6.134e+000.009215.00.50%2.40.09%motif file (matrix) pdf
92Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer1e-2-6.049e+000.009965.02.17%32.21.18%motif file (matrix) pdf
93MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer1e-2-5.495e+000.017195.03.17%55.52.04%motif file (matrix) pdf
94CHR(?)/Hela-CellCycle-Expression/Homer1e-2-5.466e+000.0174107.03.57%64.82.38%motif file (matrix) pdf
95LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer1e-2-5.134e+000.0240156.05.20%103.33.80%motif file (matrix) pdf
96SeqBias: TA-repeat1e-2-5.094e+000.0247885.029.50%721.926.52%motif file (matrix) pdf
97Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer1e-2-5.059e+000.025464.02.13%35.01.28%motif file (matrix) pdf
98Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-2-5.048e+000.025439.01.30%18.00.66%motif file (matrix) pdf
99Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-2-5.019e+000.0258127.04.23%81.52.99%motif file (matrix) pdf
100HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer1e-2-5.011e+000.0258234.07.80%166.86.13%motif file (matrix) pdf
101MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer1e-2-4.961e+000.0268111.03.70%69.22.54%motif file (matrix) pdf
102TATA-Box(TBP)/Promoter/Homer1e-2-4.799e+000.0313269.08.97%196.47.21%motif file (matrix) pdf
103NRF(NRF)/Promoter/Homer1e-2-4.712e+000.033810.00.33%1.50.05%motif file (matrix) pdf
104PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer1e-2-4.698e+000.033979.02.63%46.71.71%motif file (matrix) pdf
105Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-2-4.695e+000.033920.00.67%7.00.26%motif file (matrix) pdf