Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 845)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 705)	% of Background Sequences with Motif
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-23	-5.393e+01	0.0000	128.0	15.15%	11.0	1.56%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-22	-5.276e+01	0.0000	123.0	14.56%	10.4	1.46%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-21	-5.043e+01	0.0000	116.0	13.73%	9.5	1.34%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-20	-4.829e+01	0.0000	106.0	12.54%	7.3	1.02%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-19	-4.556e+01	0.0000	87.0	10.30%	3.4	0.48%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-18	-4.332e+01	0.0000	69.0	8.17%	0.6	0.08%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-17	-4.134e+01	0.0000	137.0	16.21%	23.3	3.28%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-17	-4.116e+01	0.0000	163.0	19.29%	35.5	5.01%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-16	-3.898e+01	0.0000	123.0	14.56%	19.5	2.75%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-14	-3.339e+01	0.0000	105.0	12.43%	16.8	2.37%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-14	-3.291e+01	0.0000	70.0	8.28%	4.9	0.69%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-14	-3.261e+01	0.0000	113.0	13.37%	20.7	2.91%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-12	-2.951e+01	0.0000	122.0	14.44%	27.9	3.94%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-11	-2.561e+01	0.0000	103.0	12.19%	22.7	3.21%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-10	-2.516e+01	0.0000	74.0	8.76%	10.9	1.54%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.362e+01	0.0000	43.0	5.09%	1.4	0.19%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.195e+01	0.0000	82.0	9.70%	16.8	2.37%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-8	-2.018e+01	0.0000	97.0	11.48%	25.1	3.54%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-7	-1.722e+01	0.0000	84.0	9.94%	22.2	3.13%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-7	-1.709e+01	0.0000	99.0	11.72%	30.3	4.28%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-7	-1.696e+01	0.0000	42.0	4.97%	4.6	0.65%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-7	-1.642e+01	0.0000	41.0	4.85%	4.7	0.67%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-7	-1.642e+01	0.0000	84.0	9.94%	23.9	3.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-6	-1.579e+01	0.0000	30.0	3.55%	2.0	0.28%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-5	-1.319e+01	0.0000	29.0	3.43%	2.5	0.36%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.261e+01	0.0000	31.0	3.67%	4.0	0.56%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-5	-1.242e+01	0.0001	41.0	4.85%	7.4	1.05%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-5	-1.226e+01	0.0001	24.0	2.84%	2.0	0.28%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-5	-1.194e+01	0.0001	40.0	4.73%	7.4	1.05%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.179e+01	0.0001	42.0	4.97%	8.9	1.26%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-5	-1.152e+01	0.0001	26.0	3.08%	2.4	0.34%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-1.149e+01	0.0001	50.0	5.92%	12.5	1.77%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-4	-1.147e+01	0.0001	177.0	20.95%	90.8	12.81%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-4	-1.146e+01	0.0001	56.0	6.63%	15.0	2.12%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-4	-1.086e+01	0.0002	64.0	7.57%	20.0	2.82%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-4	-1.068e+01	0.0002	88.0	10.41%	34.6	4.89%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-4	-1.042e+01	0.0003	24.0	2.84%	3.0	0.42%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-4	-1.042e+01	0.0003	17.0	2.01%	0.4	0.05%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-4	-9.803e+00	0.0005	16.0	1.89%	1.0	0.14%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-9.436e+00	0.0008	43.0	5.09%	11.9	1.68%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-4	-9.348e+00	0.0008	58.0	6.86%	19.1	2.69%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-9.240e+00	0.0009	70.0	8.28%	26.4	3.72%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-3	-9.132e+00	0.0010	163.0	19.29%	87.8	12.39%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-8.801e+00	0.0013	21.0	2.49%	2.6	0.37%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-8.570e+00	0.0016	14.0	1.66%	0.0	0.00%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-8.439e+00	0.0018	23.0	2.72%	3.4	0.49%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.234e+00	0.0022	40.0	4.73%	11.1	1.57%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.936e+00	0.0029	22.0	2.60%	3.8	0.54%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-3	-7.824e+00	0.0032	37.0	4.38%	10.1	1.43%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-7.765e+00	0.0033	94.0	11.12%	44.5	6.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.605e+00	0.0038	104.0	12.31%	51.1	7.21%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-3	-7.582e+00	0.0038	26.0	3.08%	5.6	0.78%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-7.582e+00	0.0038	26.0	3.08%	5.6	0.79%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-7.497e+00	0.0040	40.0	4.73%	12.1	1.70%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-7.494e+00	0.0040	28.0	3.31%	6.6	0.94%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-7.362e+00	0.0044	97.0	11.48%	47.2	6.66%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-3	-7.145e+00	0.0054	60.0	7.10%	24.0	3.39%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-2	-6.781e+00	0.0076	22.0	2.60%	4.7	0.67%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-6.725e+00	0.0079	11.0	1.30%	0.0	0.00%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-6.661e+00	0.0083	34.0	4.02%	10.4	1.46%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-6.629e+00	0.0084	26.0	3.08%	6.1	0.86%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-2	-6.563e+00	0.0085	14.0	1.66%	1.1	0.16%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.563e+00	0.0085	14.0	1.66%	1.1	0.16%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-6.563e+00	0.0085	14.0	1.66%	1.7	0.24%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-2	-6.429e+00	0.0096	51.0	6.04%	20.6	2.90%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-6.285e+00	0.0109	33.0	3.91%	10.7	1.51%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-6.212e+00	0.0116	29.0	3.43%	8.7	1.23%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-2	-6.198e+00	0.0116	27.0	3.20%	7.2	1.02%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-2	-6.078e+00	0.0129	58.0	6.86%	25.3	3.57%
SeqBias: CA-repeat	CACACACACA	1e-2	-6.004e+00	0.0136	272.0	32.19%	181.8	25.65%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-5.984e+00	0.0137	64.0	7.57%	29.8	4.21%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-5.977e+00	0.0137	34.0	4.02%	11.7	1.64%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.951e+00	0.0138	41.0	4.85%	15.7	2.22%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.680e+00	0.0178	15.0	1.78%	2.4	0.34%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-2	-5.497e+00	0.0212	9.0	1.07%	0.0	0.00%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-5.465e+00	0.0215	12.0	1.42%	1.4	0.20%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-5.452e+00	0.0216	109.0	12.90%	61.2	8.64%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-5.298e+00	0.0248	69.0	8.17%	34.1	4.81%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.288e+00	0.0248	111.0	13.14%	63.8	9.00%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-2	-5.181e+00	0.0272	14.0	1.66%	2.3	0.32%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-2	-5.179e+00	0.0272	50.0	5.92%	22.3	3.14%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-2	-5.156e+00	0.0272	89.0	10.53%	48.4	6.83%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-5.129e+00	0.0276	28.0	3.31%	9.7	1.37%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.057e+00	0.0293	175.0	20.71%	111.8	15.77%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-5.020e+00	0.0297	51.0	6.04%	23.1	3.26%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-5.020e+00	0.0297	51.0	6.04%	23.4	3.30%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-2	-4.982e+00	0.0305	18.0	2.13%	4.8	0.68%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-4.924e+00	0.0320	11.0	1.30%	1.6	0.22%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.4	0.05%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.3	0.04%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.5	0.08%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.8	0.11%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-2	-4.852e+00	0.0325	143.0	16.92%	88.1	12.43%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-4.702e+00	0.0374	25.0	2.96%	8.3	1.18%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-4.689e+00	0.0375	13.0	1.54%	2.0	0.28%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-4.616e+00	0.0399	40.0	4.73%	18.0	2.53%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-4.390e+00	0.0495	10.0	1.18%	1.4	0.19%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-4.272e+00	0.0546	7.0	0.83%	0.5	0.07%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-4.272e+00	0.0546	7.0	0.83%	0.7	0.10%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-4.271e+00	0.0546	22.0	2.60%	7.1	1.00%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-4.203e+00	0.0573	151.0	17.87%	97.6	13.77%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-4.107e+00	0.0625	49.0	5.80%	24.7	3.48%
SeqBias: TA-repeat	TATATATATA	1e-1	-3.985e+00	0.0698	199.0	23.55%	135.0	19.05%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-3.984e+00	0.0698	50.0	5.92%	25.3	3.57%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.962e+00	0.0698	28.0	3.31%	12.0	1.69%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.962e+00	0.0698	28.0	3.31%	11.8	1.66%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.865e+00	0.0759	48.0	5.68%	24.2	3.41%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.862e+00	0.0759	9.0	1.07%	1.6	0.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.783e+00	0.0808	37.0	4.38%	18.0	2.54%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.769e+00	0.0812	17.0	2.01%	5.2	0.74%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.745e+00	0.0824	229.0	27.10%	160.1	22.59%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.701e+00	0.0853	13.0	1.54%	3.6	0.50%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.660e+00	0.0874	6.0	0.71%	0.9	0.13%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-3.660e+00	0.0874	6.0	0.71%	0.3	0.04%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.654e+00	0.0874	27.0	3.20%	11.5	1.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.588e+00	0.0923	30.0	3.55%	13.2	1.86%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-3.472e+00	0.1028	28.0	3.31%	13.0	1.83%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.434e+00	0.1058	23.0	2.72%	9.2	1.30%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-3.322e+00	0.1163	14.0	1.66%	4.4	0.62%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.322e+00	0.1163	14.0	1.66%	4.1	0.58%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.275e+00	0.1199	12.0	1.42%	3.9	0.56%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.275e+00	0.1199	12.0	1.42%	4.0	0.56%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-3.146e+00	0.1354	39.0	4.62%	20.3	2.86%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-3.123e+00	0.1373	22.0	2.60%	9.8	1.38%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.066e+00	0.1443	25.0	2.96%	11.3	1.59%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.048e+00	0.1445	5.0	0.59%	0.4	0.05%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.048e+00	0.1445	5.0	0.59%	0.9	0.12%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.037e+00	0.1450	40.0	4.73%	21.4	3.03%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.034e+00	0.1450	28.0	3.31%	13.7	1.94%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.034e+00	0.1450	28.0	3.31%	13.9	1.96%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.916e+00	0.1600	38.0	4.50%	20.9	2.94%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.905e+00	0.1606	73.0	8.64%	45.6	6.44%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.862e+00	0.1663	11.0	1.30%	3.1	0.44%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.835e+00	0.1696	7.0	0.83%	1.3	0.18%
Tal1	CATCTG	1e-1	-2.571e+00	0.2191	35.0	4.14%	19.9	2.81%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.562e+00	0.2195	12.0	1.42%	4.5	0.64%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.550e+00	0.2206	49.0	5.80%	29.6	4.18%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-2.549e+00	0.2206	96.0	11.36%	64.4	9.09%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.529e+00	0.2221	29.0	3.43%	16.0	2.25%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-2.444e+00	0.2399	58.0	6.86%	36.5	5.15%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.438e+00	0.2399	4.0	0.47%	0.9	0.13%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.438e+00	0.2399	4.0	0.47%	0.0	0.00%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.438e+00	0.2399	4.0	0.47%	0.3	0.05%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-2.438e+00	0.2399	4.0	0.47%	0.5	0.08%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.381e+00	0.2468	8.0	0.95%	2.2	0.31%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.357e+00	0.2509	34.0	4.02%	19.6	2.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-2.339e+00	0.2521	6.0	0.71%	1.6	0.23%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.339e+00	0.2521	6.0	0.71%	1.4	0.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-2.329e+00	0.2530	13.0	1.54%	5.8	0.82%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.049e+00	0.3325	38.0	4.50%	23.3	3.29%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.040e+00	0.3334	812.0	96.09%	671.4	94.71%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.988e+00	0.3487	28.0	3.31%	16.5	2.33%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.962e+00	0.3534	7.0	0.83%	2.4	0.33%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.962e+00	0.3534	7.0	0.83%	2.7	0.38%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.908e+00	0.3704	29.0	3.43%	17.4	2.46%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.868e+00	0.3829	53.0	6.27%	36.0	5.08%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.863e+00	0.3829	10.0	1.18%	4.8	0.67%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.859e+00	0.3829	5.0	0.59%	1.1	0.15%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.827e+00	0.3829	3.0	0.36%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.827e+00	0.3829	3.0	0.36%	0.9	0.13%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.827e+00	0.3829	3.0	0.36%	0.3	0.04%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.827e+00	0.3829	3.0	0.36%	0.3	0.04%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.827e+00	0.3829	3.0	0.36%	0.0	0.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.827e+00	0.3829	3.0	0.36%	0.3	0.05%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.827e+00	0.3829	3.0	0.36%	0.4	0.06%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.827e+00	0.3829	3.0	0.36%	0.8	0.12%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.802e+00	0.3829	63.0	7.46%	43.5	6.13%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.754e+00	0.3988	39.0	4.62%	25.8	3.63%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.717e+00	0.4089	8.0	0.95%	3.1	0.44%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.717e+00	0.4089	8.0	0.95%	3.2	0.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.711e+00	0.4089	14.0	1.66%	7.1	1.01%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.695e+00	0.4131	57.0	6.75%	39.4	5.56%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.609e+00	0.4452	22.0	2.60%	13.1	1.85%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.609e+00	0.4452	22.0	2.60%	13.9	1.96%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.563e+00	0.4634	6.0	0.71%	2.6	0.36%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.453e+00	0.5142	13.0	1.54%	8.0	1.13%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.420e+00	0.5283	17.0	2.01%	10.3	1.45%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.410e+00	0.5306	25.0	2.96%	16.4	2.32%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.407e+00	0.5306	10.0	1.18%	5.8	0.82%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.397e+00	0.5319	817.0	96.69%	679.9	95.92%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.381e+00	0.5373	76.0	8.99%	56.8	8.02%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.374e+00	0.5379	7.0	0.83%	3.2	0.45%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.373e+00	0.5379	57.0	6.75%	41.9	5.91%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.240e+00	0.6051	8.0	0.95%	4.4	0.62%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.240e+00	0.6051	8.0	0.95%	4.5	0.64%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.218e+00	0.6051	2.0	0.24%	0.7	0.09%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.218e+00	0.6051	2.0	0.24%	0.4	0.06%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.218e+00	0.6051	2.0	0.24%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.218e+00	0.6051	2.0	0.24%	0.0	0.00%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.218e+00	0.6051	2.0	0.24%	0.5	0.08%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.218e+00	0.6051	2.0	0.24%	0.9	0.13%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.218e+00	0.6051	2.0	0.24%	0.2	0.03%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.218e+00	0.6051	2.0	0.24%	0.0	0.00%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.218e+00	0.6051	2.0	0.24%	0.4	0.06%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.189e+00	0.6051	5.0	0.59%	2.2	0.31%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.189e+00	0.6051	5.0	0.59%	2.3	0.33%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.189e+00	0.6051	5.0	0.59%	2.4	0.34%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.189e+00	0.6051	5.0	0.59%	2.6	0.36%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.188e+00	0.6051	100.0	11.83%	77.3	10.90%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.151e+00	0.6123	45.0	5.33%	33.1	4.66%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.139e+00	0.6166	9.0	1.07%	6.0	0.84%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.124e+00	0.6226	56.0	6.63%	42.8	6.04%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.098e+00	0.6358	18.0	2.13%	12.5	1.76%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.064e+00	0.6543	43.0	5.09%	32.5	4.58%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.057e+00	0.6558	6.0	0.71%	3.6	0.50%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.050e+00	0.6576	19.0	2.25%	13.5	1.91%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.715e-01	0.7076	16.0	1.89%	11.5	1.62%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.659e-01	0.7082	21.0	2.49%	15.3	2.16%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.644e-01	0.7082	3.0	0.36%	1.3	0.18%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.644e-01	0.7082	3.0	0.36%	1.5	0.21%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-9.644e-01	0.7082	3.0	0.36%	1.3	0.18%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-9.641e-01	0.7082	7.0	0.83%	4.2	0.60%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.484e-01	0.7082	75.0	8.88%	59.7	8.43%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-9.385e-01	0.7082	280.0	33.14%	229.9	32.43%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.281e-01	0.7115	17.0	2.01%	12.6	1.78%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-9.213e-01	0.7131	38.0	4.50%	29.3	4.14%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-9.019e-01	0.7237	825.0	97.63%	689.0	97.21%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.891e-01	0.7297	18.0	2.13%	13.5	1.90%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.852e-01	0.7297	45.0	5.33%	35.3	4.99%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.852e-01	0.7297	45.0	5.33%	35.1	4.96%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.452e-01	0.7520	4.0	0.47%	2.8	0.40%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.361e-01	0.7555	9.0	1.07%	6.7	0.95%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.214e-01	0.7632	20.0	2.37%	15.0	2.12%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-8.158e-01	0.7641	37.0	4.38%	29.2	4.12%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-7.598e-01	0.8045	28.0	3.31%	22.5	3.17%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.154e-01	0.8374	6.0	0.71%	4.2	0.60%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.967e-01	0.8494	31.0	3.67%	25.3	3.57%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-6.729e-01	0.8660	7.0	0.83%	5.1	0.72%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.381e-01	0.8928	8.0	0.95%	6.8	0.96%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.371e-01	0.8928	60.0	7.10%	50.2	7.08%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.244e-01	0.8973	22.0	2.60%	18.9	2.67%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.091e-01	0.9033	16.0	1.89%	13.4	1.89%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.091e-01	0.9033	16.0	1.89%	13.1	1.84%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.086e-01	0.9033	1.0	0.12%	0.6	0.09%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.086e-01	0.9033	1.0	0.12%	0.4	0.06%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.086e-01	0.9033	1.0	0.12%	0.0	0.00%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.086e-01	0.9033	1.0	0.12%	0.9	0.12%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.086e-01	0.9033	1.0	0.12%	0.0	0.00%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.086e-01	0.9033	1.0	0.12%	0.5	0.06%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.086e-01	0.9033	1.0	0.12%	0.3	0.04%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.086e-01	0.9033	1.0	0.12%	0.0	0.00%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.871e-01	0.9033	51.0	6.04%	43.6	6.15%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.691e-01	0.9033	2.0	0.24%	1.2	0.17%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.691e-01	0.9033	2.0	0.24%	1.1	0.16%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.691e-01	0.9033	2.0	0.24%	1.7	0.24%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.691e-01	0.9033	2.0	0.24%	1.6	0.22%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.540e-01	0.9033	47.0	5.56%	40.3	5.69%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.521e-01	0.9033	19.0	2.25%	16.4	2.31%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.406e-01	0.9051	3.0	0.36%	2.2	0.31%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-5.176e-01	0.9188	4.0	0.47%	3.6	0.50%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.176e-01	0.9188	4.0	0.47%	3.5	0.50%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-4.713e-01	0.9586	97.0	11.48%	84.5	11.92%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-4.675e-01	0.9586	48.0	5.68%	42.7	6.02%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.548e-01	0.9669	64.0	7.57%	56.3	7.95%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.503e-01	0.9674	18.0	2.13%	16.3	2.30%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.178e-01	0.9955	38.0	4.50%	34.2	4.83%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-4.173e-01	0.9955	46.0	5.44%	41.5	5.86%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-3.976e-01	1.0000	23.0	2.72%	21.7	3.06%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.769e-01	1.0000	15.0	1.78%	14.3	2.02%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.440e-01	1.0000	39.0	4.62%	36.1	5.09%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-3.417e-01	1.0000	30.0	3.55%	28.8	4.06%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.360e-01	1.0000	49.0	5.80%	45.3	6.39%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.244e-01	1.0000	786.0	93.02%	663.5	93.60%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.180e-01	1.0000	52.0	6.15%	48.4	6.83%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-3.164e-01	1.0000	4.0	0.47%	5.0	0.70%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.097e-01	1.0000	35.0	4.14%	33.1	4.67%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.944e-01	1.0000	135.0	15.98%	121.8	17.18%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.568e-01	1.0000	90.0	10.65%	83.6	11.79%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.448e-01	1.0000	25.0	2.96%	25.1	3.54%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.335e-01	1.0000	28.0	3.31%	28.0	3.96%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.328e-01	1.0000	1.0	0.12%	1.5	0.21%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.310e-01	1.0000	41.0	4.85%	40.6	5.73%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.236e-01	1.0000	43.0	5.09%	42.6	6.01%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.200e-01	1.0000	10.0	1.18%	11.0	1.55%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.124e-01	1.0000	85.0	10.06%	80.0	11.29%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.100e-01	1.0000	6.0	0.71%	7.7	1.09%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.027e-01	1.0000	5.0	0.59%	6.8	0.95%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.916e-01	1.0000	4.0	0.47%	5.2	0.73%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.916e-01	1.0000	4.0	0.47%	5.6	0.79%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.916e-01	1.0000	26.0	3.08%	27.1	3.82%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.845e-01	1.0000	85.0	10.06%	81.5	11.50%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.820e-01	1.0000	56.0	6.63%	55.3	7.80%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.746e-01	1.0000	3.0	0.36%	4.9	0.70%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.746e-01	1.0000	3.0	0.36%	4.1	0.57%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.624e-01	1.0000	52.0	6.15%	52.6	7.42%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.604e-01	1.0000	16.0	1.89%	18.5	2.61%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.601e-01	1.0000	17.0	2.01%	19.2	2.71%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.596e-01	1.0000	13.0	1.54%	15.8	2.23%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.571e-01	1.0000	21.0	2.49%	23.8	3.36%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.549e-01	1.0000	10.0	1.18%	12.6	1.77%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.520e-01	1.0000	9.0	1.07%	11.6	1.63%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.488e-01	1.0000	58.0	6.86%	58.4	8.24%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.471e-01	1.0000	2.0	0.24%	3.3	0.47%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.427e-01	1.0000	7.0	0.83%	9.7	1.37%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.358e-01	1.0000	6.0	0.71%	8.2	1.16%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.355e-01	1.0000	628.0	74.32%	543.7	76.70%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.233e-01	1.0000	315.0	37.28%	284.7	40.17%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.203e-01	1.0000	20.0	2.37%	23.8	3.36%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.200e-01	1.0000	18.0	2.13%	21.0	2.97%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.200e-01	1.0000	18.0	2.13%	21.2	2.99%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.196e-01	1.0000	17.0	2.01%	20.4	2.88%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.141e-01	1.0000	192.0	22.72%	179.9	25.38%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.131e-01	1.0000	12.0	1.42%	15.8	2.23%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.110e-01	1.0000	657.0	77.75%	568.5	80.20%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.106e-01	1.0000	11.0	1.30%	14.3	2.02%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-9.930e-02	1.0000	1.0	0.12%	2.1	0.30%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.930e-02	1.0000	1.0	0.12%	2.6	0.36%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-9.820e-02	1.0000	3.0	0.36%	5.1	0.72%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-9.344e-02	1.0000	7.0	0.83%	10.8	1.53%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.344e-02	1.0000	7.0	0.83%	10.9	1.53%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-9.057e-02	1.0000	20.0	2.37%	24.9	3.51%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-8.910e-02	1.0000	33.0	3.91%	37.6	5.31%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-7.797e-02	1.0000	5.0	0.59%	8.2	1.15%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.686e-02	1.0000	11.0	1.30%	15.5	2.18%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-7.567e-02	1.0000	2.0	0.24%	4.4	0.61%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.567e-02	1.0000	2.0	0.24%	4.9	0.69%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.356e-02	1.0000	55.0	6.51%	59.2	8.35%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-7.045e-02	1.0000	30.0	3.55%	35.6	5.02%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.982e-02	1.0000	9.0	1.07%	13.1	1.85%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.749e-02	1.0000	4.0	0.47%	7.2	1.01%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.749e-02	1.0000	4.0	0.47%	7.6	1.07%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.456e-02	1.0000	3.0	0.36%	6.0	0.85%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.456e-02	1.0000	3.0	0.36%	6.1	0.86%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.456e-02	1.0000	3.0	0.36%	6.2	0.87%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.404e-02	1.0000	28.0	3.31%	34.2	4.82%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.358e-02	1.0000	41.0	4.85%	47.1	6.64%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.303e-02	1.0000	25.0	2.96%	31.5	4.45%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-4.766e-02	1.0000	58.0	6.86%	64.9	9.16%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-4.722e-02	1.0000	5.0	0.59%	9.9	1.39%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.395e-02	1.0000	1.0	0.12%	3.4	0.48%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-4.030e-02	1.0000	52.0	6.15%	59.4	8.38%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-3.008e-02	1.0000	26.0	3.08%	34.9	4.93%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.957e-02	1.0000	25.0	2.96%	33.2	4.68%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.957e-02	1.0000	25.0	2.96%	33.7	4.75%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.840e-02	1.0000	23.0	2.72%	31.2	4.41%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.719e-02	1.0000	8.0	0.95%	14.5	2.04%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-2.387e-02	1.0000	7.0	0.83%	13.2	1.86%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.236e-02	1.0000	4.0	0.47%	9.7	1.36%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.031e-02	1.0000	6.0	0.71%	12.7	1.79%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.973e-02	1.0000	1.0	0.12%	4.2	0.59%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.963e-02	1.0000	2.0	0.24%	7.0	0.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.941e-02	1.0000	21.0	2.49%	30.1	4.25%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.128e-02	1.0000	12.0	1.42%	21.2	2.99%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.864e-03	1.0000	2.0	0.24%	7.6	1.08%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.921e-03	1.0000	7.0	0.83%	15.5	2.18%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.537e-03	1.0000	23.0	2.72%	35.9	5.07%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.989e-03	1.0000	4.0	0.47%	11.8	1.67%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.989e-03	1.0000	4.0	0.47%	11.3	1.60%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.035e-03	1.0000	1.0	0.12%	6.9	0.97%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.966e-03	1.0000	8.0	0.95%	18.4	2.60%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.462e-03	1.0000	17.0	2.01%	30.5	4.31%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.074e-03	1.0000	5.0	0.59%	14.2	2.00%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.726e-03	1.0000	23.0	2.72%	39.9	5.63%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.366e-03	1.0000	6.0	0.71%	17.9	2.53%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.100e-03	1.0000	120.0	14.20%	141.6	19.98%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-5.840e-04	1.0000	20.0	2.37%	38.2	5.39%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.810e-04	1.0000	2.0	0.24%	12.9	1.82%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.510e-04	1.0000	53.0	6.27%	80.4	11.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-9.400e-05	1.0000	59.0	6.98%	88.1	12.42%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-5.000e-06	1.0000	22.0	2.60%	51.4	7.25%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-0.000e+00	1.0000	2.0	0.24%	22.7	3.21%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	0.0	0.00%	2.2	0.30%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.7	0.38%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	0.0	0.00%	3.1	0.44%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	845.0	100.00%	708.8	100.00%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.10%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.11%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.09%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.04%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.04%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.04%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.04%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	8.2	1.15%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	0.000e+00	1.0000	0.0	0.00%	13.8	1.94%