Supplementals

Supplementary files for "A network-based approach for improving annotation of transcription factor functions and binding sites in Arabidopsis Thaliana "

by Tanzira Najnin, Sakhawat Hossain Saimon, Garry Sunter and Jianhua Ruan

Contact: jianhua.ruan@utsa.edu

Supplemental files

Supplementary Figure S1: Number of unique TF binding sites vs. gene length.

Supplementary Figure S2: Number of enriched GO terms using different coefficient cutoff values.

Supplementary Table S1 (210MB): coefficient matrix for constructing GRN. A cutoff = 0.075 was used to construct the GRN used in the paper.

Supplementary Table S2 (1.7MB): Predicted functional annotations for each TF from global GRN.

Supplementary Table S3 (0.9MB): Predicted functional annotations for each TF from abiotic stress specific GRN.

Supplementary Table S4 (0.8MB): Predicted functional annotations for each TF from biotic stress specific GRN.

Supplementary Table S5 (0.7MB): Predicted functional annotations for each TF from development specific GRN.

Supplementary Table S6 (0.7MB): Predicted functional annotations for each TF from hormone response specific GRN.

Supplementary Table S7 (2.1MB): Predicted 6-mer binding motifs for each TF.

Supplementary Table S8 (0.2MB): Predicted 7-mer binding motifs for each TF.

Supplementary Table S9 (6KB): Predicted 8-mer binding motifs for each TF.

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