Mark Doderer

Office:
    SB 1.01.04; knock loudly on outside door

Office Hours:
    Monday and Wednesday 10:30 - 11:45 and by appointment

Phone:
    (none)

Email Address:
    mdoderer at cs.utsa.edu

Research

    Publications:

  1. Amitava Karmaker, Kihoon Yoon, Mark Doderer, Russell Kruzelock, Stephen Kwek, 2007, Identifying Transcription Regulatory Elements in the Human and Mouse Genomes Using Tissue-Specific Gene Expression Profiles, Journal of Integrative Bioinformatics, 4(2). [Link]
  2. Mark Doderer, Kihoon Yoon, and Stephen Kwek, 2007, Species Independent Protein Localization Prediction for Multicompartmentalized Proteins, The 2007 International Conference on Machine Learning: Models, Technologies & Applications and for publications in the conference proceedings (MLMTA'07).
  3. Amitava Karmaker, Mark Doderer, Stephen E. Harris, Stephen Kwek, 2007, Discovery of Transcription Factors Using Protein Subcellular Localization Prediction and Gene Expression Profile Analysis, The 2007 International Conference on Machine Learning: Models, Technologies & Applications and for publications in the conference proceedings (MLMTA'07).
  4. Mark Doderer, Kihoon Yoon, John Salinas and Stephen Kwek, 2006, Protein Subcellular Localization Prediction using a Hybrid of Similarity search and Error-Correcting Output Code Techniques That Produces Interpretable Results, In Silico Biology 6, 0040. [Link].
    Abstracts:
  1. Kihoon Yoon, Ravi Dashnamoorthy, Mark Doderer, Amy Wiles, Daijin Ko, Stephen Kwek, Alex J.R. Bishop, 2007, Determining off-target effects within Drosophila genome-wide screens, Keystone Symposia, Systems Biology and Regulatory Networks (X5), Mar 22 - Mar 27, 2007, Steamboat Springs, Colorado
  2. Amitava Karmaker, Eddie Salinas, Kihoon Yoon, Mark Doderer, Stephen Harris,Stephen Kwek, 2007, The Construction of a Human Transcription Subnet Using Tissue-Specific Gene Expression Profile and Cross Genome Comparison, with E2F5 and RELB as case studies, Keystone Symposia, Systems Biology and Regulatory Networks (X5), Mar 22 - Mar 27, 2007, Steamboat Springs, Colorado
  3. Mark Doderer, Stephen Kwek, John Salinas and Kihoon Yoon, 2005, Layered Classification using Homologous Similarity and Error-Correcting Output Coding for Predicting Protein Subcellular Localization, 3rd Annual Rocky Mountain Regional Bioinformatics Conference (Rocky'05).
  4. Mark Doderer, John Salinas, Kihoon Yoon and Stephen Kwek, 2005. Using error-correcting output coding for predicting multi-class subcellular localization, International conference on Intelligent Systems for Molecular Biology (ISMB).

Courses Taught:

    Fall 2008 CS2123

    Summer 2008 CS1713
    Spring 2008 CS1023
    Fall 2007 CS1023
    Summer 2007 CS1723
    Spring 2007 CS1033
    Fall 2006 CS1033
    Summer 2006 CS1723 ,CS2213
    Spring 2006 CS1033
    Fall 2005 CS1023, CS1033
    Summer 2005  CS1723, CS2213
    Spring 2005 CS1723
    Fall 2004 CS1723, CS2213
    Summer 2004 CS1713, CS1723
    Spring 2004 CS1723
    Fall 2003 CS1713