Information for 5-TGCCTGAGACAT (Motif 12)


Reverse Opposite:

p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.685
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets44.9 +/- 15.7bp
Average Position of motif in Background30.4 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGCCTGAGACAT
AGCCTCAGGCA-

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGCCTGAGACAT
AGCCTCAGGCA-

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTGAGACAT-
ANTGCCTGAGGCAAN

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGCCTGAGACAT
NGCCTGAGGCN-

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCCTGAGACAT-
ATTGCCTGAGGCAAT

Ap1/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TGCCTGAGACAT
---CTGAGTCAC

GCN4(MacIsaac)/Yeast

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TGCCTGAGACAT
----TGAGTCAT

MOT3/Literature(Harbison)/Yeast

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCTGAGACAT
TACCTN------

MOT3(MacIsaac)/Yeast

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCTGAGACAT
TACCTN------

MOT3/MA0340.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCTGAGACAT
TACCTN------