Information for 8-RCCCCAGGCAMG (Motif 17)


Reverse Opposite:

p-value:1e-6
log p-value:-1.549e+01
Information Content per bp:1.612
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif3.60%
Number of Background Sequences with motif36.9
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets37.0 +/- 18.2bp
Average Position of motif in Background31.7 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---RCCCCAGGCAMG
ATTGCCTCAGGCAAT

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-RCCCCAGGCAMG
AGCCTCAGGCA--

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-RCCCCAGGCAMG
CGCCTCAGGCA--

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---RCCCCAGGCAMG
NTNGCCTCAGGCNNN

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-RCCCCAGGCAMG
AGCCTCAGGCA--

SOK2(MacIsaac)/Yeast

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:RCCCCAGGCAMG
---GCAGGCAA-

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---RCCCCAGGCAMG
NTCGCCTCAGGCAAT

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---RCCCCAGGCAMG
NTCCCCTCAGGGANT

E(spl)/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RCCCCAGGCAMG
-CACAAGGCACA

E(spl)/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RCCCCAGGCAMG
GCACGNGGCACA