Information for 16-CAGCCTGC (Motif 19)


Reverse Opposite:

p-value:1e-3
log p-value:-8.523e+00
Information Content per bp:1.530
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets40.1 +/- 16.3bp
Average Position of motif in Background34.4 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGC
CCAGCA---

CRZ1(MacIsaac)/Yeast

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAGCCTGC
CAGCCAC-

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGCCTGC-
-TNCCTGCA

ABI3/MA0564.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGCCTGC-
CTGCATGCA

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGC
BCAGACWA-

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGCCTGC
CAGCC---

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCTGC
DCTCAGCAGG-

sna/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGCCTGC
CCACCTGC

ROX1(MacIsaac)/Yeast

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCCTGC
ANAAGCCCGC

PHD1/PHD1_BUT90/8-SUT1(Harbison)/Yeast

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAGCCTGC---
---CCTGCGGC