Information for 4-VCAGCTGYNN (Motif 2)


Reverse Opposite:

p-value:1e-28
log p-value:-6.657e+01
Information Content per bp:1.582
Number of Target Sequences with motif747.0
Percentage of Target Sequences with motif24.90%
Number of Background Sequences with motif327.3
Percentage of Background Sequences with motif13.00%
Average Position of motif in Targets36.9 +/- 19.0bp
Average Position of motif in Background37.0 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:VCAGCTGYNN
GCAGCTGTNN

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.97
Offset:-2
Orientation:reverse strand
Alignment:--VCAGCTGYNN
CAGCAGCTGN--

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.96
Offset:-3
Orientation:reverse strand
Alignment:---VCAGCTGYNN
NNAGCAGCTGCT-

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.96
Offset:0
Orientation:forward strand
Alignment:VCAGCTGYNN
ACAGCTGTTN

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.95
Offset:-3
Orientation:forward strand
Alignment:---VCAGCTGYNN
NNVVCAGCTGBN-

Myog/MA0500.1/Jaspar

Match Rank:6
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--VCAGCTGYNN
NNGCAGCTGTC-

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:VCAGCTGYNN
HCAGCTGDTN

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:8
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:VCAGCTGYNN
ACAGCTGTTV

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--VCAGCTGYNN
NNGCAGCTGTT-

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:VCAGCTGYNN
-CAGCTGTT-