Information for 7-ATCTATCA (Motif 3)


Reverse Opposite:

p-value:1e-17
log p-value:-4.069e+01
Information Content per bp:1.888
Number of Target Sequences with motif136.0
Percentage of Target Sequences with motif4.53%
Number of Background Sequences with motif21.5
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets40.2 +/- 20.3bp
Average Position of motif in Background43.2 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FZF1/MA0298.1/Jaspar

Match Rank:1
Score:0.87
Offset:2
Orientation:forward strand
Alignment:ATCTATCA
--CTATCA

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-ATCTATCA-
CATYAATCAT

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---ATCTATCA-
GYCATCMATCAT

Optix/MA0199.1/Jaspar

Match Rank:4
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:ATCTATCA
---TATCA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ATCTATCA
TCATCAATCA

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--ATCTATCA--
CCATCAATCAAA

Optix/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:ATCTATCA---
-NNTATCACTT

br-Z2/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ATCTATCA-
-TCTATTAA

Optix/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:ATCTATCA---
---TATCACNT

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-ATCTATCA--
AATGTATCAAT