Information for 4-RCAGVAGMCAGA (Motif 9)


Reverse Opposite:

p-value:1e-10
log p-value:-2.358e+01
Information Content per bp:1.672
Number of Target Sequences with motif64.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets36.2 +/- 18.5bp
Average Position of motif in Background43.5 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:RCAGVAGMCAGA--
----ATGCCAGACN

grh/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:RCAGVAGMCAGA
----AAACCAG-

grh/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:RCAGVAGMCAGA
-----AACCAG-

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RCAGVAGMCAGA---
--AGGTGNCAGACAG

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RCAGVAGMCAGA--
--AGGTGHCAGACA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:RCAGVAGMCAGA-----
-------CCAGACRSVB

E(spl)/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RCAGVAGMCAGA
GCACGNGGCACA

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RCAGVAGMCAGA-------
--CAAATCCAGACATCACA

SeqBias: GA-repeat

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RCAGVAGMCAGA--
----GAGAGAGAGA

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RCAGVAGMCAGA--
--AGGAAACAGCTG