| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-440 | -1.013e+03 | 0.0000 | 1953.0 | 65.10% | 221.9 | 8.81% | motif file (matrix) |
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| 2 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-362 | -8.341e+02 | 0.0000 | 1652.0 | 55.07% | 161.9 | 6.43% | motif file (matrix) |
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| 3 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-309 | -7.116e+02 | 0.0000 | 1369.0 | 45.63% | 100.0 | 3.97% | motif file (matrix) |
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| 4 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-295 | -6.806e+02 | 0.0000 | 1316.0 | 43.87% | 94.2 | 3.74% | motif file (matrix) |
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| 5 |  | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-146 | -3.371e+02 | 0.0000 | 550.0 | 18.33% | 5.1 | 0.20% | motif file (matrix) |
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| 6 |  | ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer | 1e-103 | -2.381e+02 | 0.0000 | 594.0 | 19.80% | 58.3 | 2.32% | motif file (matrix) |
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| 7 |  | PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer | 1e-102 | -2.361e+02 | 0.0000 | 585.0 | 19.50% | 57.0 | 2.26% | motif file (matrix) |
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| 8 |  | Unknown5/Drosophila-Promoters/Homer | 1e-58 | -1.336e+02 | 0.0000 | 498.0 | 16.60% | 94.7 | 3.76% | motif file (matrix) |
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| 9 |  | CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-23 | -5.508e+01 | 0.0000 | 754.0 | 25.13% | 357.6 | 14.20% | motif file (matrix) |
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| 10 |  | GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-22 | -5.187e+01 | 0.0000 | 100.0 | 3.33% | 3.9 | 0.15% | motif file (matrix) |
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| 11 |  | Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-18 | -4.303e+01 | 0.0000 | 295.0 | 9.83% | 95.1 | 3.78% | motif file (matrix) |
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| 12 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-18 | -4.271e+01 | 0.0000 | 217.0 | 7.23% | 55.2 | 2.19% | motif file (matrix) |
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| 13 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-18 | -4.231e+01 | 0.0000 | 267.0 | 8.90% | 81.3 | 3.23% | motif file (matrix) |
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| 14 |  | Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-15 | -3.531e+01 | 0.0000 | 313.0 | 10.43% | 118.2 | 4.69% | motif file (matrix) |
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| 15 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-14 | -3.312e+01 | 0.0000 | 487.0 | 16.23% | 232.7 | 9.24% | motif file (matrix) |
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| 16 |  | SeqBias: polyA-repeat | 1e-13 | -3.180e+01 | 0.0000 | 2921.0 | 97.37% | 2342.4 | 93.03% | motif file (matrix) |
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| 17 |  | Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-13 | -3.165e+01 | 0.0000 | 341.0 | 11.37% | 142.7 | 5.67% | motif file (matrix) |
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| 18 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-12 | -2.981e+01 | 0.0000 | 465.0 | 15.50% | 226.8 | 9.01% | motif file (matrix) |
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| 19 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-12 | -2.963e+01 | 0.0000 | 206.0 | 6.87% | 67.4 | 2.68% | motif file (matrix) |
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| 20 |  | Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-12 | -2.915e+01 | 0.0000 | 383.0 | 12.77% | 174.9 | 6.95% | motif file (matrix) |
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| 21 |  | MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-12 | -2.900e+01 | 0.0000 | 259.0 | 8.63% | 98.1 | 3.90% | motif file (matrix) |
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| 22 |  | Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-12 | -2.824e+01 | 0.0000 | 621.0 | 20.70% | 338.5 | 13.45% | motif file (matrix) |
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| 23 |  | SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-12 | -2.808e+01 | 0.0000 | 1075.0 | 35.83% | 677.2 | 26.90% | motif file (matrix) |
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| 24 |  | RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-12 | -2.802e+01 | 0.0000 | 181.0 | 6.03% | 57.0 | 2.26% | motif file (matrix) |
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| 25 |  | Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-11 | -2.617e+01 | 0.0000 | 212.0 | 7.07% | 76.5 | 3.04% | motif file (matrix) |
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| 26 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-11 | -2.593e+01 | 0.0000 | 111.0 | 3.70% | 24.9 | 0.99% | motif file (matrix) |
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| 27 |  | RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-11 | -2.583e+01 | 0.0000 | 173.0 | 5.77% | 56.0 | 2.22% | motif file (matrix) |
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| 28 |  | RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-11 | -2.534e+01 | 0.0000 | 166.0 | 5.53% | 53.0 | 2.10% | motif file (matrix) |
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| 29 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-10 | -2.523e+01 | 0.0000 | 175.0 | 5.83% | 57.1 | 2.27% | motif file (matrix) |
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| 30 |  | RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-10 | -2.395e+01 | 0.0000 | 212.0 | 7.07% | 80.0 | 3.18% | motif file (matrix) |
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| 31 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-10 | -2.350e+01 | 0.0000 | 170.0 | 5.67% | 57.9 | 2.30% | motif file (matrix) |
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| 32 |  | GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-9 | -2.286e+01 | 0.0000 | 381.0 | 12.70% | 189.0 | 7.51% | motif file (matrix) |
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| 33 |  | HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer | 1e-9 | -2.171e+01 | 0.0000 | 203.0 | 6.77% | 79.6 | 3.16% | motif file (matrix) |
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| 34 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-9 | -2.128e+01 | 0.0000 | 181.0 | 6.03% | 68.0 | 2.70% | motif file (matrix) |
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| 35 |  | HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-8 | -2.036e+01 | 0.0000 | 420.0 | 14.00% | 223.3 | 8.87% | motif file (matrix) |
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| 36 |  | NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-8 | -1.953e+01 | 0.0000 | 222.0 | 7.40% | 95.3 | 3.78% | motif file (matrix) |
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| 37 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-8 | -1.906e+01 | 0.0000 | 86.0 | 2.87% | 20.1 | 0.80% | motif file (matrix) |
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| 38 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-7 | -1.811e+01 | 0.0000 | 150.0 | 5.00% | 55.3 | 2.20% | motif file (matrix) |
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| 39 |  | GAGA-repeat/SacCer-Promoters/Homer | 1e-7 | -1.663e+01 | 0.0000 | 672.0 | 22.40% | 420.6 | 16.71% | motif file (matrix) |
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| 40 |  | BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-7 | -1.660e+01 | 0.0000 | 291.0 | 9.70% | 147.8 | 5.87% | motif file (matrix) |
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| 41 |  | ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-7 | -1.656e+01 | 0.0000 | 236.0 | 7.87% | 111.9 | 4.44% | motif file (matrix) |
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| 42 |  | MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-6 | -1.563e+01 | 0.0000 | 297.0 | 9.90% | 154.0 | 6.12% | motif file (matrix) |
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| 43 |  | ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-6 | -1.547e+01 | 0.0000 | 138.0 | 4.60% | 53.4 | 2.12% | motif file (matrix) |
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| 44 |  | PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.504e+01 | 0.0000 | 86.0 | 2.87% | 25.7 | 1.02% | motif file (matrix) |
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| 45 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-6 | -1.458e+01 | 0.0000 | 173.0 | 5.77% | 76.9 | 3.05% | motif file (matrix) |
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| 46 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-6 | -1.456e+01 | 0.0000 | 192.0 | 6.40% | 88.0 | 3.50% | motif file (matrix) |
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| 47 |  | E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-6 | -1.450e+01 | 0.0000 | 315.0 | 10.50% | 170.2 | 6.76% | motif file (matrix) |
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| 48 |  | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-6 | -1.398e+01 | 0.0000 | 148.0 | 4.93% | 62.2 | 2.47% | motif file (matrix) |
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| 49 |  | E-box/Drosophila-Promoters/Homer | 1e-5 | -1.331e+01 | 0.0000 | 85.0 | 2.83% | 27.9 | 1.11% | motif file (matrix) |
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| 50 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-5 | -1.267e+01 | 0.0000 | 255.0 | 8.50% | 135.0 | 5.36% | motif file (matrix) |
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| 51 |  | ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-5 | -1.252e+01 | 0.0000 | 28.0 | 0.93% | 2.0 | 0.08% | motif file (matrix) |
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| 52 |  | SeqBias: A/T bias | 1e-5 | -1.231e+01 | 0.0000 | 2152.0 | 71.73% | 1665.3 | 66.14% | motif file (matrix) |
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| 53 |  | AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-4 | -1.113e+01 | 0.0001 | 256.0 | 8.53% | 141.1 | 5.61% | motif file (matrix) |
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| 54 |  | Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-4 | -1.046e+01 | 0.0002 | 158.0 | 5.27% | 77.8 | 3.09% | motif file (matrix) |
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| 55 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-4 | -1.043e+01 | 0.0002 | 50.0 | 1.67% | 13.5 | 0.54% | motif file (matrix) |
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| 56 |  | SeqBias: polyC-repeat | 1e-4 | -1.041e+01 | 0.0002 | 2718.0 | 90.60% | 2194.6 | 87.16% | motif file (matrix) |
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| 57 |  | GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-4 | -1.041e+01 | 0.0002 | 27.0 | 0.90% | 3.8 | 0.15% | motif file (matrix) |
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| 58 |  | Tal1 | 1e-4 | -1.007e+01 | 0.0003 | 340.0 | 11.33% | 205.5 | 8.16% | motif file (matrix) |
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| 59 |  | PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-4 | -9.302e+00 | 0.0006 | 51.0 | 1.70% | 15.2 | 0.60% | motif file (matrix) |
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| 60 |  | ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer | 1e-3 | -9.154e+00 | 0.0007 | 15.0 | 0.50% | 0.4 | 0.02% | motif file (matrix) |
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| 61 |  | EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-3 | -8.980e+00 | 0.0008 | 200.0 | 6.67% | 110.5 | 4.39% | motif file (matrix) |
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| 62 |  | Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -8.634e+00 | 0.0011 | 69.0 | 2.30% | 26.6 | 1.06% | motif file (matrix) |
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| 63 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-3 | -8.472e+00 | 0.0013 | 65.0 | 2.17% | 24.0 | 0.95% | motif file (matrix) |
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| 64 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -8.471e+00 | 0.0013 | 114.0 | 3.80% | 54.9 | 2.18% | motif file (matrix) |
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| 65 |  | SeqBias: GA-repeat | 1e-3 | -8.468e+00 | 0.0013 | 1052.0 | 35.07% | 769.8 | 30.57% | motif file (matrix) |
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| 66 |  | ETS(ETS)/Promoter/Homer | 1e-3 | -8.178e+00 | 0.0016 | 46.0 | 1.53% | 15.0 | 0.60% | motif file (matrix) |
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| 67 |  | ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.799e+00 | 0.0024 | 205.0 | 6.83% | 118.5 | 4.71% | motif file (matrix) |
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| 68 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-3 | -7.618e+00 | 0.0028 | 118.0 | 3.93% | 59.1 | 2.35% | motif file (matrix) |
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| 69 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-3 | -7.599e+00 | 0.0028 | 287.0 | 9.57% | 178.9 | 7.11% | motif file (matrix) |
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| 70 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-3 | -7.551e+00 | 0.0029 | 62.0 | 2.07% | 24.2 | 0.96% | motif file (matrix) |
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| 71 |  | CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer | 1e-3 | -7.239e+00 | 0.0039 | 47.0 | 1.57% | 16.1 | 0.64% | motif file (matrix) |
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| 72 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.181e+00 | 0.0041 | 18.0 | 0.60% | 2.7 | 0.11% | motif file (matrix) |
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| 73 |  | LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer | 1e-3 | -7.146e+00 | 0.0042 | 180.0 | 6.00% | 103.2 | 4.10% | motif file (matrix) |
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| 74 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -6.778e+00 | 0.0060 | 66.0 | 2.20% | 28.8 | 1.14% | motif file (matrix) |
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| 75 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.764e+00 | 0.0060 | 61.0 | 2.03% | 25.4 | 1.01% | motif file (matrix) |
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| 76 |  | SUT1?/SacCer-Promoters/Homer | 1e-2 | -6.737e+00 | 0.0060 | 735.0 | 24.50% | 529.8 | 21.04% | motif file (matrix) |
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| 77 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.302e+00 | 0.0092 | 61.0 | 2.03% | 26.6 | 1.06% | motif file (matrix) |
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| 78 |  | Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -6.166e+00 | 0.0104 | 191.0 | 6.37% | 115.3 | 4.58% | motif file (matrix) |
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| 79 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-2 | -6.099e+00 | 0.0110 | 10.0 | 0.33% | 0.3 | 0.01% | motif file (matrix) |
pdf |
| 80 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -5.994e+00 | 0.0121 | 13.0 | 0.43% | 1.5 | 0.06% | motif file (matrix) |
pdf |
| 81 |  | ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-2 | -5.774e+00 | 0.0148 | 118.0 | 3.93% | 65.7 | 2.61% | motif file (matrix) |
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| 82 |  | Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.711e+00 | 0.0156 | 260.0 | 8.67% | 169.0 | 6.71% | motif file (matrix) |
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| 83 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -5.190e+00 | 0.0260 | 175.0 | 5.83% | 108.4 | 4.30% | motif file (matrix) |
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| 84 |  | ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-2 | -4.911e+00 | 0.0339 | 259.0 | 8.63% | 172.2 | 6.84% | motif file (matrix) |
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| 85 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -4.829e+00 | 0.0364 | 100.0 | 3.33% | 56.6 | 2.25% | motif file (matrix) |
pdf |