Information for 3-CMTMGTCA (Motif 3)


Reverse Opposite:

p-value:1e-14
log p-value:-3.229e+01
Information Content per bp:1.729
Number of Target Sequences with motif94.0
Percentage of Target Sequences with motif19.42%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets40.0 +/- 18.3bp
Average Position of motif in Background37.2 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ASH1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CMTMGTCA-
---AGTCAA

TGA1(bZIP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CMTMGTCA----
TAACGTCANCAN

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CMTMGTCA--
----GTCATN

WRKY40/MA1085.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CMTMGTCA--
--TGGTCAAC

cnc::maf-S/MA0530.1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CMTMGTCA--
ATNTGCNGAGTCATN

HVH21(HD-KNOTTED)/Hordeum vulgare/AthaMap

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CMTMGTCA----
ANCTGTCACNNN

WRKY48/MA1088.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CMTMGTCA---
-GAGGTCAACG

WRKY57/MA1089.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CMTMGTCA---
-AAAGTCAACG

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CMTMGTCA---
---AGTCACGC

PB0108.1_Atf1_2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CMTMGTCA---
NTTATTCGTCATNC