Information for 4-CACAGAGA (Motif 4)


Reverse Opposite:

p-value:1e-13
log p-value:-3.068e+01
Information Content per bp:1.785
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif20.87%
Number of Background Sequences with motif16.2
Percentage of Background Sequences with motif4.22%
Average Position of motif in Targets36.9 +/- 20.1bp
Average Position of motif in Background36.8 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MET28/MA0332.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGA
CCACAG---

MET28(MacIsaac)/Yeast

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGA
CCACAG---

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CACAGAGA
CACAGN--

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGA-
RGAGAGAGAG

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CACAGAGA
AAACCACAGAN-

PDR8/MA0354.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CACAGAGA-
-ACGGAGAT

sma-4/MA0925.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CACAGAGA--
NNCCAGACANN

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACAGAGA-----
TTGACCGAGAATTCC

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CACAGAGA
-ACAAAG-

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CACAGAGA-----
NNNACCGAGAGTNNN