Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 484)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 384)	% of Background Sequences with Motif
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-88	-2.037e+02	0.0000	382.0	78.93%	51.1	13.32%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-62	-1.450e+02	0.0000	303.0	62.60%	35.6	9.26%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-58	-1.348e+02	0.0000	267.0	55.17%	23.5	6.13%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-55	-1.282e+02	0.0000	250.0	51.65%	19.8	5.15%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-15	-3.546e+01	0.0000	97.0	20.04%	11.9	3.09%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-9	-2.109e+01	0.0000	44.0	9.09%	2.9	0.76%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-8	-2.046e+01	0.0000	76.0	15.70%	14.3	3.71%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-6	-1.436e+01	0.0000	138.0	28.51%	56.2	14.62%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-5	-1.313e+01	0.0001	66.0	13.64%	17.4	4.53%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-5	-1.249e+01	0.0001	54.0	11.16%	12.8	3.35%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.153e+01	0.0003	60.0	12.40%	16.4	4.27%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-1.119e+01	0.0004	65.0	13.43%	19.8	5.17%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-4	-1.044e+01	0.0009	63.0	13.02%	19.4	5.04%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-4	-9.990e+00	0.0013	27.0	5.58%	3.7	0.97%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-3	-8.928e+00	0.0034	30.0	6.20%	5.5	1.42%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-8.900e+00	0.0034	22.0	4.55%	2.4	0.62%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-8.485e+00	0.0047	38.0	7.85%	9.5	2.46%
SeqBias: GA-repeat	GAGAGAGAGA	1e-3	-7.826e+00	0.0086	225.0	46.49%	134.6	35.05%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-7.681e+00	0.0094	36.0	7.44%	9.5	2.47%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-7.651e+00	0.0094	13.0	2.69%	0.3	0.07%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-7.651e+00	0.0094	13.0	2.69%	0.9	0.24%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-7.449e+00	0.0098	29.0	5.99%	6.5	1.69%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-7.449e+00	0.0098	29.0	5.99%	6.4	1.66%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-3	-7.239e+00	0.0116	52.0	10.74%	19.0	4.94%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-7.056e+00	0.0133	12.0	2.48%	0.2	0.05%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.825e+00	0.0162	56.0	11.57%	21.8	5.67%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-6.620e+00	0.0191	41.0	8.47%	13.9	3.61%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-6.606e+00	0.0191	27.0	5.58%	6.4	1.67%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.591e+00	0.0191	50.0	10.33%	18.6	4.83%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-6.565e+00	0.0191	20.0	4.13%	3.8	1.00%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-6.452e+00	0.0197	46.0	9.50%	16.1	4.20%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-2	-6.276e+00	0.0227	40.0	8.26%	13.0	3.39%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-6.260e+00	0.0227	14.0	2.89%	1.3	0.33%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-6.260e+00	0.0227	14.0	2.89%	1.8	0.48%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-5.886e+00	0.0307	37.0	7.64%	12.7	3.30%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-2	-5.871e+00	0.0307	10.0	2.07%	0.0	0.00%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.765e+00	0.0328	27.0	5.58%	7.8	2.03%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.638e+00	0.0363	18.0	3.72%	3.8	0.98%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-5.351e+00	0.0471	39.0	8.06%	14.7	3.82%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.280e+00	0.0493	9.0	1.86%	0.8	0.21%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.204e+00	0.0519	12.0	2.48%	2.0	0.52%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.185e+00	0.0519	17.0	3.51%	3.8	0.98%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-5.003e+00	0.0605	23.0	4.75%	6.9	1.80%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-4.740e+00	0.0768	16.0	3.31%	3.1	0.80%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-4.660e+00	0.0814	18.0	3.72%	5.0	1.29%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-4.626e+00	0.0824	20.0	4.13%	5.6	1.45%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-4.622e+00	0.0824	22.0	4.55%	6.2	1.61%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-4.607e+00	0.0824	40.0	8.26%	16.0	4.18%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-4.578e+00	0.0824	33.0	6.82%	13.0	3.38%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.578e+00	0.0824	33.0	6.82%	12.6	3.28%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-4.468e+00	0.0870	147.0	30.37%	89.9	23.41%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-4.465e+00	0.0870	62.0	12.81%	30.1	7.84%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-4.431e+00	0.0870	68.0	14.05%	34.2	8.91%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-4.427e+00	0.0870	13.0	2.69%	3.0	0.78%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-4.360e+00	0.0899	60.0	12.40%	29.7	7.73%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-4.236e+00	0.0999	19.0	3.93%	5.1	1.34%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-4.234e+00	0.0999	61.0	12.60%	30.1	7.85%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.231e+00	0.0999	37.0	7.64%	15.1	3.93%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.172e+00	0.1012	10.0	2.07%	1.3	0.35%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-4.169e+00	0.1012	45.0	9.30%	20.4	5.32%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-1	-4.054e+00	0.1101	33.0	6.82%	13.9	3.61%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.857e+00	0.1319	18.0	3.72%	5.7	1.47%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.805e+00	0.1368	27.0	5.58%	10.1	2.64%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.728e+00	0.1453	25.0	5.17%	9.1	2.37%
SeqBias: CA-repeat	CACACACACA	1e-1	-3.704e+00	0.1467	119.0	24.59%	72.7	18.92%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.667e+00	0.1476	9.0	1.86%	1.8	0.48%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.667e+00	0.1476	9.0	1.86%	1.4	0.35%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-1	-3.666e+00	0.1476	43.0	8.88%	20.2	5.27%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.513e+00	0.1648	11.0	2.27%	2.7	0.70%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-1	-3.513e+00	0.1648	11.0	2.27%	2.5	0.66%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.511e+00	0.1648	6.0	1.24%	1.0	0.26%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-3.488e+00	0.1648	17.0	3.51%	6.0	1.56%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-1	-3.461e+00	0.1664	13.0	2.69%	4.0	1.03%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-1	-3.422e+00	0.1708	476.0	98.35%	368.0	95.84%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.417e+00	0.1708	24.0	4.96%	9.0	2.35%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.417e+00	0.1708	24.0	4.96%	9.8	2.56%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.321e+00	0.1815	40.0	8.26%	19.9	5.18%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-3.314e+00	0.1815	32.0	6.61%	14.4	3.74%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.260e+00	0.1880	20.0	4.13%	7.1	1.86%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-1	-3.206e+00	0.1960	25.0	5.17%	10.5	2.73%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.156e+00	0.2035	33.0	6.82%	15.7	4.10%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-1	-3.117e+00	0.2091	28.0	5.79%	12.3	3.21%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.115e+00	0.2091	23.0	4.75%	9.6	2.49%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.057e+00	0.2167	12.0	2.48%	3.5	0.92%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.054e+00	0.2167	31.0	6.40%	14.1	3.67%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-3.027e+00	0.2181	21.0	4.34%	8.7	2.28%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.924e+00	0.2336	5.0	1.03%	0.8	0.20%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.924e+00	0.2336	5.0	1.03%	0.3	0.08%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.924e+00	0.2336	5.0	1.03%	0.7	0.17%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.921e+00	0.2336	24.0	4.96%	10.1	2.63%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.848e+00	0.2465	41.0	8.47%	21.8	5.68%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-2.729e+00	0.2747	71.0	14.67%	42.8	11.14%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.728e+00	0.2747	20.0	4.13%	8.1	2.12%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.728e+00	0.2747	20.0	4.13%	8.2	2.14%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.716e+00	0.2747	13.0	2.69%	4.9	1.27%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.685e+00	0.2751	7.0	1.45%	1.4	0.35%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.668e+00	0.2770	31.0	6.40%	15.3	3.99%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.665e+00	0.2770	11.0	2.27%	3.6	0.92%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.665e+00	0.2770	11.0	2.27%	3.5	0.92%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-2.652e+00	0.2770	478.0	98.76%	372.2	96.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.544e+00	0.3011	21.0	4.34%	9.2	2.40%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.532e+00	0.3017	38.0	7.85%	20.8	5.42%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-2.529e+00	0.3017	357.0	73.76%	265.6	69.17%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.525e+00	0.3017	163.0	33.68%	111.9	29.15%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.441e+00	0.3210	19.0	3.93%	8.9	2.33%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.364e+00	0.3432	12.0	2.48%	4.3	1.12%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.337e+00	0.3432	4.0	0.83%	0.0	0.00%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.337e+00	0.3432	4.0	0.83%	0.6	0.16%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.337e+00	0.3432	4.0	0.83%	0.6	0.16%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.337e+00	0.3432	4.0	0.83%	0.9	0.24%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-2.329e+00	0.3432	28.0	5.79%	14.1	3.67%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.288e+00	0.3507	10.0	2.07%	3.9	1.03%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.250e+00	0.3609	41.0	8.47%	23.0	5.99%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.239e+00	0.3617	23.0	4.75%	11.2	2.91%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.229e+00	0.3623	8.0	1.65%	2.2	0.57%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.221e+00	0.3623	26.0	5.37%	13.1	3.41%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.212e+00	0.3623	6.0	1.24%	1.7	0.45%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.212e+00	0.3623	6.0	1.24%	1.8	0.48%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.212e+00	0.3623	6.0	1.24%	1.9	0.50%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.167e+00	0.3692	42.0	8.68%	24.5	6.38%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.131e+00	0.3767	13.0	2.69%	5.2	1.37%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.131e+00	0.3767	13.0	2.69%	6.0	1.55%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.067e+00	0.3981	57.0	11.78%	35.2	9.17%
SeqBias: CG bias	SSSSSSSSSS	1e0	-2.020e+00	0.4141	205.0	42.36%	147.6	38.43%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.997e+00	0.4203	25.0	5.17%	13.9	3.62%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.942e+00	0.4404	14.0	2.89%	6.7	1.74%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.927e+00	0.4404	9.0	1.86%	3.5	0.90%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.927e+00	0.4404	9.0	1.86%	3.5	0.90%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.865e+00	0.4647	36.0	7.44%	21.7	5.64%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.841e+00	0.4725	33.0	6.82%	19.3	5.03%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.832e+00	0.4731	7.0	1.45%	2.1	0.55%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.827e+00	0.4731	12.0	2.48%	5.2	1.34%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.825e+00	0.4731	92.0	19.01%	62.7	16.33%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.756e+00	0.4987	78.0	16.12%	52.1	13.57%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.754e+00	0.4987	5.0	1.03%	1.2	0.30%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.752e+00	0.4987	3.0	0.62%	0.0	0.00%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.752e+00	0.4987	3.0	0.62%	0.6	0.17%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.752e+00	0.4987	3.0	0.62%	0.0	0.00%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.752e+00	0.4987	3.0	0.62%	0.0	0.00%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.737e+00	0.4987	31.0	6.40%	18.1	4.70%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.708e+00	0.4987	10.0	2.07%	4.5	1.16%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.672e+00	0.5120	22.0	4.55%	12.2	3.18%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.634e+00	0.5283	29.0	5.99%	18.0	4.69%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.541e+00	0.5714	17.0	3.51%	9.0	2.35%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.541e+00	0.5714	17.0	3.51%	9.6	2.50%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.540e+00	0.5714	11.0	2.27%	5.7	1.48%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.407e+00	0.6446	9.0	1.86%	4.6	1.19%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.393e+00	0.6493	29.0	5.99%	18.6	4.83%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.317e+00	0.6870	4.0	0.83%	1.1	0.30%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.317e+00	0.6870	4.0	0.83%	1.2	0.32%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.317e+00	0.6870	4.0	0.83%	1.7	0.43%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.271e+00	0.7140	10.0	2.07%	5.3	1.39%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.264e+00	0.7147	7.0	1.45%	3.3	0.85%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.256e+00	0.7159	43.0	8.88%	29.4	7.65%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.252e+00	0.7159	24.0	4.96%	15.9	4.14%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.215e+00	0.7357	441.0	91.12%	344.4	89.71%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.167e+00	0.7357	2.0	0.41%	0.0	0.00%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.167e+00	0.7357	2.0	0.41%	0.5	0.13%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.167e+00	0.7357	2.0	0.41%	0.8	0.22%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.167e+00	0.7357	2.0	0.41%	0.0	0.00%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.167e+00	0.7357	2.0	0.41%	0.0	0.00%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.167e+00	0.7357	2.0	0.41%	0.6	0.17%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.167e+00	0.7357	2.0	0.41%	0.4	0.10%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.167e+00	0.7357	2.0	0.41%	0.0	0.00%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.167e+00	0.7357	2.0	0.41%	0.9	0.22%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.167e+00	0.7357	2.0	0.41%	0.7	0.18%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.127e+00	0.7505	8.0	1.65%	4.8	1.24%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.111e+00	0.7581	55.0	11.36%	39.3	10.22%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.103e+00	0.7601	5.0	1.03%	2.1	0.53%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.086e+00	0.7685	31.0	6.40%	21.4	5.58%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.000e+00	0.8324	50.0	10.33%	36.4	9.48%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.994e-01	0.8324	13.0	2.69%	8.9	2.33%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.994e-01	0.8324	13.0	2.69%	8.5	2.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.901e-01	0.8324	21.0	4.34%	14.2	3.69%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-9.678e-01	0.8324	6.0	1.24%	3.8	1.00%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.678e-01	0.8324	6.0	1.24%	3.0	0.79%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.678e-01	0.8324	6.0	1.24%	3.9	1.02%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-9.420e-01	0.8476	22.0	4.55%	15.4	4.01%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-9.185e-01	0.8629	31.0	6.40%	22.6	5.89%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-9.058e-01	0.8643	3.0	0.62%	2.0	0.52%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.058e-01	0.8643	3.0	0.62%	1.1	0.29%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.721e-01	0.8841	11.0	2.27%	7.8	2.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.721e-01	0.8841	11.0	2.27%	7.3	1.89%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-8.576e-01	0.8921	24.0	4.96%	17.4	4.53%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.441e-01	0.8994	20.0	4.13%	14.3	3.72%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-7.983e-01	0.9365	53.0	10.95%	40.2	10.46%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.979e-01	0.9365	8.0	1.65%	6.0	1.56%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.979e-01	0.9365	8.0	1.65%	5.4	1.42%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.809e-01	0.9378	4.0	0.83%	2.1	0.55%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-7.009e-01	0.9846	5.0	1.03%	3.4	0.88%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.009e-01	0.9846	5.0	1.03%	3.6	0.93%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.009e-01	0.9846	5.0	1.03%	4.0	1.03%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.009e-01	0.9846	5.0	1.03%	3.4	0.88%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-7.009e-01	0.9846	5.0	1.03%	3.5	0.92%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.009e-01	0.9846	5.0	1.03%	3.3	0.85%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.979e-01	0.9846	72.0	14.88%	56.2	14.63%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.827e-01	0.9876	15.0	3.10%	11.1	2.90%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.827e-01	0.9876	15.0	3.10%	11.9	3.10%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.482e-01	1.0000	16.0	3.31%	12.8	3.33%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-6.439e-01	1.0000	114.0	23.55%	90.4	23.55%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-6.427e-01	1.0000	6.0	1.24%	4.7	1.22%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.427e-01	1.0000	6.0	1.24%	4.2	1.10%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.200e-01	1.0000	22.0	4.55%	17.2	4.47%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-6.174e-01	1.0000	431.0	89.05%	341.7	89.00%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.171e-01	1.0000	17.0	3.51%	13.8	3.59%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.970e-01	1.0000	7.0	1.45%	5.6	1.46%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.970e-01	1.0000	7.0	1.45%	5.3	1.39%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.830e-01	1.0000	1.0	0.21%	0.8	0.22%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.830e-01	1.0000	1.0	0.21%	0.9	0.22%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.830e-01	1.0000	1.0	0.21%	0.5	0.12%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.830e-01	1.0000	1.0	0.21%	0.7	0.19%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-5.830e-01	1.0000	1.0	0.21%	0.0	0.00%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.830e-01	1.0000	1.0	0.21%	0.7	0.19%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-5.792e-01	1.0000	13.0	2.69%	10.4	2.70%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-5.594e-01	1.0000	8.0	1.65%	6.6	1.72%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.326e-01	1.0000	2.0	0.41%	1.7	0.44%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.326e-01	1.0000	2.0	0.41%	1.7	0.44%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-5.326e-01	1.0000	2.0	0.41%	1.6	0.42%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.326e-01	1.0000	2.0	0.41%	1.6	0.40%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.003e-01	1.0000	49.0	10.12%	40.0	10.43%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.999e-01	1.0000	10.0	2.07%	8.4	2.19%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.989e-01	1.0000	33.0	6.82%	27.8	7.23%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.968e-01	1.0000	3.0	0.62%	2.9	0.77%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.968e-01	1.0000	3.0	0.62%	2.9	0.76%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.968e-01	1.0000	3.0	0.62%	2.9	0.76%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.968e-01	1.0000	3.0	0.62%	2.6	0.68%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.968e-01	1.0000	3.0	0.62%	2.3	0.59%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-4.968e-01	1.0000	3.0	0.62%	2.5	0.66%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-4.878e-01	1.0000	76.0	15.70%	62.0	16.15%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.682e-01	1.0000	4.0	0.83%	3.1	0.82%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-4.629e-01	1.0000	119.0	24.59%	97.8	25.46%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.441e-01	1.0000	5.0	1.03%	4.6	1.19%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.343e-01	1.0000	70.0	14.46%	58.1	15.12%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.339e-01	1.0000	13.0	2.69%	11.7	3.05%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.339e-01	1.0000	13.0	2.69%	11.1	2.90%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-4.203e-01	1.0000	55.0	11.36%	46.6	12.13%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.875e-01	1.0000	8.0	1.65%	7.6	1.98%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.839e-01	1.0000	16.0	3.31%	14.8	3.85%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.078e-01	1.0000	36.0	7.44%	32.1	8.37%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.796e-01	1.0000	4.0	0.83%	4.7	1.21%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.796e-01	1.0000	4.0	0.83%	4.7	1.22%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.785e-01	1.0000	5.0	1.03%	5.1	1.33%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.758e-01	1.0000	3.0	0.62%	3.3	0.86%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.750e-01	1.0000	6.0	1.24%	6.7	1.74%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.615e-01	1.0000	2.0	0.41%	2.0	0.53%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.615e-01	1.0000	2.0	0.41%	2.1	0.54%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.615e-01	1.0000	2.0	0.41%	2.1	0.56%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.528e-01	1.0000	10.0	2.07%	11.0	2.86%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.167e-01	1.0000	1.0	0.21%	1.9	0.50%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.167e-01	1.0000	1.0	0.21%	1.4	0.37%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.167e-01	1.0000	1.0	0.21%	1.6	0.41%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.167e-01	1.0000	1.0	0.21%	1.1	0.27%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-2.167e-01	1.0000	1.0	0.21%	1.6	0.42%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.153e-01	1.0000	26.0	5.37%	25.8	6.71%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.778e-01	1.0000	7.0	1.45%	8.8	2.30%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.778e-01	1.0000	7.0	1.45%	8.1	2.12%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.774e-01	1.0000	9.0	1.86%	10.0	2.61%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.740e-01	1.0000	11.0	2.27%	12.0	3.14%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.691e-01	1.0000	13.0	2.69%	14.4	3.75%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.650e-01	1.0000	4.0	0.83%	6.0	1.55%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.639e-01	1.0000	27.0	5.58%	27.7	7.21%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.525e-01	1.0000	3.0	0.62%	4.2	1.09%
Tal1	CATCTG	1e0	-1.365e-01	1.0000	43.0	8.88%	42.9	11.17%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.306e-01	1.0000	2.0	0.41%	3.7	0.95%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.306e-01	1.0000	2.0	0.41%	3.9	1.03%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.306e-01	1.0000	2.0	0.41%	3.1	0.81%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.306e-01	1.0000	2.0	0.41%	3.2	0.83%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.306e-01	1.0000	2.0	0.41%	4.0	1.04%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.306e-01	1.0000	2.0	0.41%	3.9	1.01%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.218e-01	1.0000	467.0	96.49%	374.2	97.46%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.209e-01	1.0000	11.0	2.27%	13.5	3.51%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.178e-01	1.0000	8.0	1.65%	10.2	2.67%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.170e-01	1.0000	16.0	3.31%	18.5	4.83%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.108e-01	1.0000	6.0	1.24%	8.0	2.09%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.974e-02	1.0000	1.0	0.21%	2.4	0.61%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.974e-02	1.0000	1.0	0.21%	2.8	0.72%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.337e-02	1.0000	3.0	0.62%	5.9	1.54%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-8.337e-02	1.0000	3.0	0.62%	5.3	1.39%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.337e-02	1.0000	3.0	0.62%	5.5	1.44%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.337e-02	1.0000	3.0	0.62%	5.6	1.47%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-7.932e-02	1.0000	9.0	1.86%	12.7	3.31%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.873e-02	1.0000	23.0	4.75%	26.8	6.97%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.520e-02	1.0000	2.0	0.41%	4.5	1.17%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-6.300e-02	1.0000	36.0	7.44%	39.9	10.38%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.713e-02	1.0000	25.0	5.17%	29.3	7.63%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.492e-02	1.0000	3.0	0.62%	6.1	1.58%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.161e-02	1.0000	6.0	1.24%	10.4	2.70%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.111e-02	1.0000	28.0	5.79%	33.2	8.64%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.848e-02	1.0000	1.0	0.21%	3.2	0.84%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.848e-02	1.0000	1.0	0.21%	3.7	0.96%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.848e-02	1.0000	1.0	0.21%	3.0	0.79%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.231e-02	1.0000	2.0	0.41%	5.9	1.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.231e-02	1.0000	2.0	0.41%	5.2	1.36%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.948e-02	1.0000	17.0	3.51%	23.8	6.19%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.825e-02	1.0000	15.0	3.10%	21.2	5.53%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.805e-02	1.0000	7.0	1.45%	12.5	3.25%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.540e-02	1.0000	12.0	2.48%	18.6	4.85%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.483e-02	1.0000	6.0	1.24%	11.1	2.90%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.384e-02	1.0000	3.0	0.62%	7.2	1.86%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-2.384e-02	1.0000	3.0	0.62%	8.0	2.07%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.116e-02	1.0000	5.0	1.03%	10.0	2.61%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.069e-02	1.0000	65.0	13.43%	70.8	18.44%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.142e-02	1.0000	13.0	2.69%	22.0	5.73%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.694e-03	1.0000	2.0	0.41%	7.6	1.98%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.694e-03	1.0000	2.0	0.41%	7.1	1.86%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-7.694e-03	1.0000	2.0	0.41%	7.4	1.92%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.296e-03	1.0000	1.0	0.21%	5.7	1.49%
SeqBias: TA-repeat	TATATATATA	1e0	-4.231e-03	1.0000	32.0	6.61%	44.2	11.52%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.681e-03	1.0000	5.0	1.03%	13.7	3.57%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-3.512e-03	1.0000	23.0	4.75%	35.4	9.22%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-3.188e-03	1.0000	1.0	0.21%	6.2	1.61%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.188e-03	1.0000	1.0	0.21%	6.0	1.58%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.681e-03	1.0000	6.0	1.24%	15.2	3.95%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.616e-03	1.0000	12.0	2.48%	23.8	6.20%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-2.593e-03	1.0000	17.0	3.51%	29.0	7.56%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.306e-03	1.0000	11.0	2.27%	22.2	5.79%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.762e-03	1.0000	2.0	0.41%	9.3	2.41%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.762e-03	1.0000	2.0	0.41%	9.3	2.42%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-9.750e-04	1.0000	9.0	1.86%	21.3	5.55%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-0.000e+00	1.0000	1.0	0.21%	18.1	4.73%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-0.000e+00	1.0000	0.0	0.00%	1.1	0.27%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1.1	0.28%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	0.0	0.00%	1.5	0.40%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-0.000e+00	1.0000	0.0	0.00%	1.6	0.43%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-0.000e+00	1.0000	0.0	0.00%	1.4	0.36%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-0.000e+00	1.0000	0.0	0.00%	1.2	0.31%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-0.000e+00	1.0000	0.0	0.00%	1.0	0.26%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-0.000e+00	1.0000	0.0	0.00%	1.5	0.38%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-0.000e+00	1.0000	0.0	0.00%	1.2	0.30%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.01%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.13%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.09%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	484.0	100.00%	384.0	100.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.25%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.08%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.08%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.2	0.05%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.19%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.21%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.24%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.14%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.08%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.24%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.07%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.12%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	0.000e+00	1.0000	0.0	0.00%	7.9	2.06%