Information for 10-RGAGGATGAGKG (Motif 13)


Reverse Opposite:

p-value:1e-12
log p-value:-2.913e+01
Information Content per bp:1.666
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets37.8 +/- 20.6bp
Average Position of motif in Background40.4 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-RGAGGATGAGKG
AAGAGGATTAG--

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:RGAGGATGAGKG---
-----TTGAGTGSTT

GZF3/Literature(Harbison)/Yeast

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:RGAGGATGAGKG
----GATAAG--

GZF3(MacIsaac)/Yeast

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:RGAGGATGAGKG
----GATAAG--

z/dmmpmm(Down)/fly

Match Rank:5
Score:0.59
Offset:6
Orientation:forward strand
Alignment:RGAGGATGAGKG
------TGAGTG

GAT1/GAT1_RAPA/1-GZF3,2-GLN3(Harbison)/Yeast

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RGAGGATGAGKG
---AGATAAG--

GAT1(MacIsaac)/Yeast

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RGAGGATGAGKG
---AGATAAG--

oc/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:RGAGGATGAGKG-
ANCGGATTAGNGN

z/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.58
Offset:6
Orientation:forward strand
Alignment:RGAGGATGAGKG
------TGAGTG

z/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:RGAGGATGAGKG
-----TTGAGTG