Information for 21-CTTGCTGAGC (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.765e+01
Information Content per bp:1.855
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.0 +/- 19.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CTTGCTGAGC
CCTGCTGAGH

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTGAGC--
NNTCCTGCTGTGNNN

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTGAGC--
TCNCCTGCTGNGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTGAGC--
TNTCCTGCTGTGNNG

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTGAGC
CCCCCTGCTGTG-

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTTGCTGAGC
AATTTGCTGAC-

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTGCTGAGC-
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTGCTGAGC-
CGCGCTGAGCN

SWI5/Literature(Harbison)/Yeast

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTTGCTGAGC
--GGCTGA--

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTTGCTGAGC--
--TGCTGACTCA