Information for 5-NARCAGCTGB (Motif 2)


Reverse Opposite:

p-value:1e-43
log p-value:-1.010e+02
Information Content per bp:1.617
Number of Target Sequences with motif620.0
Percentage of Target Sequences with motif20.67%
Number of Background Sequences with motif190.8
Percentage of Background Sequences with motif7.63%
Average Position of motif in Targets36.1 +/- 19.2bp
Average Position of motif in Background42.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.96
Offset:1
Orientation:forward strand
Alignment:NARCAGCTGB
-ANCAGCTG-

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:NARCAGCTGB
CAGCAGCTGN

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:forward strand
Alignment:NARCAGCTGB
NAHCAGCTGD

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.94
Offset:1
Orientation:forward strand
Alignment:NARCAGCTGB---
-AGCAGCTGCTNN

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.94
Offset:1
Orientation:forward strand
Alignment:NARCAGCTGB
-AACAGCTG-

Myog/MA0500.1/Jaspar

Match Rank:6
Score:0.94
Offset:1
Orientation:forward strand
Alignment:NARCAGCTGB--
-GACAGCTGCAG

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.94
Offset:0
Orientation:forward strand
Alignment:NARCAGCTGB
NAACAGCTGG

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.94
Offset:1
Orientation:forward strand
Alignment:NARCAGCTGB--
-AACAGCTGCAG

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:NARCAGCTGB--
--GCAGCTGTNN

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-NARCAGCTGB-
NNVVCAGCTGBN