Information for 5-RCAGGAGRCAGA (Motif 7)


Reverse Opposite:

p-value:1e-16
log p-value:-3.798e+01
Information Content per bp:1.647
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif2.93%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets35.4 +/- 20.1bp
Average Position of motif in Background49.1 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:RCAGGAGRCAGA--
--AGGAAACAGCTG

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RCAGGAGRCAGA
NACAGGAAAT---

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RCAGGAGRCAGA---
--AGGTGNCAGACAG

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RCAGGAGRCAGA
ACAGGAAGTG--

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:RCAGGAGRCAGA
---GTAAACAG-

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-RCAGGAGRCAGA
NDCAGGAARTNN-

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RCAGGAGRCAGA
AACAGGAAGT---

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RCAGGAGRCAGA--
--AGGTGHCAGACA

FOXP2/MA0593.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RCAGGAGRCAGA
-AAGTAAACAAA

FOXP1/MA0481.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RCAGGAGRCAGA-
CAAAAGTAAACAAAG