Information for 13-BAGTCACAGW (Motif 8)


Reverse Opposite:

p-value:1e-14
log p-value:-3.235e+01
Information Content per bp:1.728
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets36.1 +/- 18.5bp
Average Position of motif in Background51.6 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ASH1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:BAGTCACAGW
-AGTCAA---

PHD1(MacIsaac)/Yeast

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:BAGTCACAGW
-AGGCAC---

ARG81(MacIsaac)/Yeast

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-BAGTCACAGW
NGAGTCAC---

ARG81/MA0272.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-BAGTCACAGW
NGAGTCAC---

BAS1/BAS1_SM/2-BAS1(Harbison)/Yeast

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:BAGTCACAGW
GAGTCA----

WRKY23/MA1080.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:BAGTCACAGW
-AGTCAACG-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-BAGTCACAGW
CCAGGAACAG-

BAS1(MacIsaac)/Yeast

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----BAGTCACAGW
GNAAGAGTCA----

MOT3/Literature(Harbison)/Yeast

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:BAGTCACAGW
NAGGCA----

MOT3(MacIsaac)/Yeast

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:BAGTCACAGW
NAGGCA----