Information for 6-CCACCTGGTGGC (Motif 11)


Reverse Opposite:

p-value:1e-13
log p-value:-3.207e+01
Information Content per bp:1.738
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets39.5 +/- 17.6bp
Average Position of motif in Background38.2 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----CCACCTGGTGGC--
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.82
Offset:-6
Orientation:forward strand
Alignment:------CCACCTGGTGGC--
ANAGTGCCACCTGGTGGCCA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.82
Offset:-8
Orientation:forward strand
Alignment:--------CCACCTGGTGGC
CNNBRGCGCCCCCTGSTGGC

FIGLA/MA0820.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCACCTGGTGGC
ACCACCTGTT---

RPN4/MA0373.1/Jaspar

Match Rank:5
Score:0.66
Offset:6
Orientation:forward strand
Alignment:CCACCTGGTGGC-
------GGTGGCG

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCACCTGGTGGC
CACCCCCGGGGGGG

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCACCTGGTGGC
NNCACCTGNN---

sna/MA0086.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCACCTGGTGGC
-CACCTG-----

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCACCTGGTGGC-
CCCCCCCGGGGGGGT

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCACCTGGTGGC-
CCCCCCCGGGGGGGT