Information for 12-CTTGCCAGAN (Motif 12)


Reverse Opposite:

p-value:1e-13
log p-value:-3.153e+01
Information Content per bp:1.441
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif10.9
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets38.1 +/- 21.3bp
Average Position of motif in Background41.6 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CTTGCCAGAN-
-ATGCCAGACN

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CTTGCCAGAN
CTTGGCAA--

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CTTGCCAGAN
CGTGCCAAG-

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:CTTGCCAGAN
--TGCCAA--

RIM101/Literature(Harbison)/Yeast

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTGCCAGAN
CTTGGCA---

RIM101(MacIsaac)/Yeast

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTGCCAGAN
CTTGGCA---

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTTGCCAGAN
-TTGACAGC-

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTGCCAGAN
VBTGWCAGCB

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTTGCCAGAN
-YTGWCADY-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCCAGAN
NNACTTGCCTT--