Information for 19-GCAAATTGCC (Motif 14)


Reverse Opposite:

p-value:1e-8
log p-value:-2.059e+01
Information Content per bp:1.809
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets37.9 +/- 16.4bp
Average Position of motif in Background40.4 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAAATTGCC
GGAAATTCCC

PH0024.1_Dlx5/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCAAATTGCC--
NANNGNTAATTACCNN

PH0009.1_Bsx/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCAAATTGCC--
NTNAGNTAATTACCTN

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCAAATTGCC
GGAAATTCCC

HESX1/MA0894.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAAATTGCC
GCTAATTGGC

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCAAATTGCC
ATATGCAAAT----

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCAAATTGCC--
-NNACTTGCCTT

PH0007.1_Barx1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCAAATTGCC--
ATNNACTAATTACTTT

ftz/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCAAATTGCC
--TAATTGCC

GBX2/MA0890.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAAATTGCC
NNTAATTGNN