Information for 9-SSCCAGAGGCAG (Motif 20)


Reverse Opposite:

p-value:1e-7
log p-value:-1.619e+01
Information Content per bp:1.643
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets32.0 +/- 16.2bp
Average Position of motif in Background37.3 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:SSCCAGAGGCAG
-GAGAGAGCAA-

Trl/MA0205.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:SSCCAGAGGCAG
-GAGAGAGCAA-

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:SSCCAGAGGCAG
--RGAGAGAG--

brk/dmmpmm(Down)/fly

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:SSCCAGAGGCAG
----AGCGCCGG

BAS1/MA0278.1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----SSCCAGAGGCAG-----
GCACAGCCAGAGTCAAGTCAA

Adf1/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:SSCCAGAGGCAG-
-NACAGAAGCAGC

SeqBias: GA-repeat

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:SSCCAGAGGCAG-
---GAGAGAGAGA

BAS1(MacIsaac)/Yeast

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:SSCCAGAGGCAG
-GNAAGAGTCA-

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-SSCCAGAGGCAG
ATGCCAGACN---

Tal1

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:SSCCAGAGGCAG
---CAGATG---