Information for 15-GGGCCGCG (Motif 21)


Reverse Opposite:

p-value:1e-6
log p-value:-1.529e+01
Information Content per bp:1.781
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets36.5 +/- 21.0bp
Average Position of motif in Background38.7 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STP1(MacIsaac)/Yeast

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGGCCGCG
GCGCCGCA

STP1/MA0394.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGGCCGCG
GCGCCGCA

ERF069/MA0997.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGGCCGCG-
GCGCCGCCA

NtERF2(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GGGCCGCG
-GGCGGCG

CRF4/MA0976.1/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGGCCGCG
GCGCCGCC

CRF2/MA0975.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GGGCCGCG-
-GGCGGCGG

RAP2-6/MA1052.1/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GGGCCGCG-
-GGCGGCGC

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:8
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GGGCCGCG
NGGGGCGGTG

RAP2-3/MA1051.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGGCCGCG
GCGCCGCC

RDS1/MA0361.1/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGGCCGCG
NCGGCCG--