Information for 7-GATCGGCA (Motif 7)


Reverse Opposite:

p-value:1e-24
log p-value:-5.716e+01
Information Content per bp:1.613
Number of Target Sequences with motif418.0
Percentage of Target Sequences with motif13.93%
Number of Background Sequences with motif154.6
Percentage of Background Sequences with motif5.77%
Average Position of motif in Targets37.9 +/- 17.9bp
Average Position of motif in Background38.9 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YPR013C/MA0434.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GATCGGCA
NGATCTACA

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GATCGGCA
TGATCTG--

GATA15/MA1016.1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GATCGGCA
TATGATCAG--

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GATCGGCA--
NNTTGGCANN

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GATCGGCA--
BTGABTGACAGS

HAP4(MacIsaac)/Yeast

Match Rank:6
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------GATCGGCA
TCGNNNCTGATTGGT-

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GATCGGCA--
NTGATTGACAGN

PB0115.1_Ehf_2/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GATCGGCA------
AAGATCGGAANTNNNA

GATA8/MA1017.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GATCGGCA
CAGATCTAG-

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GATCGGCA-
NGTGGGCAT