Information for 4-GCCAARCW (Motif 4)


Reverse Opposite:

p-value:1e-21
log p-value:-5.045e+01
Information Content per bp:1.684
Number of Target Sequences with motif289.0
Percentage of Target Sequences with motif30.94%
Number of Background Sequences with motif93.3
Percentage of Background Sequences with motif11.79%
Average Position of motif in Targets38.1 +/- 19.8bp
Average Position of motif in Background39.9 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GCCAARCW
CGTGCCAAG--

RIM101/MA0368.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GCCAARCW
CGCCAAG--

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GCCAARCW
TGCCAA---

RIM101/Literature(Harbison)/Yeast

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GCCAARCW
TGCCAAG--

RIM101(MacIsaac)/Yeast

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GCCAARCW
TGCCAAG--

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---GCCAARCW
GGTGCCAAGT-

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GCCAARCW
TTGCCAAG--

HAP2/MA0313.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCCAARCW
ACCAA---

WRKY18/MA1077.1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCCAARCW
ATGGTCAACG-

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCCAARCW
ATGCCAACC-