Information for 6-CTGGAAGCAG (Motif 7)


Reverse Opposite:

p-value:1e-13
log p-value:-3.055e+01
Information Content per bp:1.662
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif7.39%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets38.8 +/- 18.5bp
Average Position of motif in Background32.9 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR2(MacIsaac)/Yeast

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CTGGAAGCAG
-NGGAAGC--

GCR2/MA0305.1/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:CTGGAAGCAG
-NGGAAGC--

GCR1/MA0304.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTGGAAGCAG
-TGGAAGCC-

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CTGGAAGCAG
--NGAAGC--

GCR1(MacIsaac)/Yeast

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTGGAAGCAG
-TGGAAGCCC

Eip74EF/MA0026.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTGGAAGCAG
CCGGAAG---

MF0001.1_ETS_class/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTGGAAGCAG
ACCGGAAG---

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGGAAGCAG---
-AGGAAACAGCTG

ELK4/MA0076.2/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTGGAAGCAG
NCCGGAAGTGG

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGGAAGCAG
ACAGGAAGTG-