Information for 12-GCCCATCAGA (Motif 10)


Reverse Opposite:

p-value:1e-15
log p-value:-3.463e+01
Information Content per bp:1.699
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets35.9 +/- 18.2bp
Average Position of motif in Background14.5 +/- 4.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HAP4(MacIsaac)/Yeast

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCCCATCAGA-----
ACCAATCAGNNNCGA

HAP3/MA0314.1/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----GCCCATCAGA
TCTNAACCAATCAGA

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------GCCCATCAGA
AAATGGACCAATCAG-

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GCCCATCAGA-----
TGGACCAATCAGCACTCT

PCF/Arabidopsis-Promoters/Homer

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GCCCATCAGA
NHHARGCCCAWWWNN

HAP5/MA0316.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCCCATCAGA-----
ACCAATCAGANCCCA

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCCCATCAGA
AGCCAATCGG-

HAP4/HAP4_YPD/1-GZF3,11-HAP4(Harbison)/Yeast

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCCCATCAGA
GGCCAATCA--

HAP2(MacIsaac)/Yeast

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCCATCAGA
-CCAATGAG-

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCCATCAGA
GGCCATTAAC