Information for 3-CAGGAAGT (Motif 3)


Reverse Opposite:

p-value:1e-49
log p-value:-1.142e+02
Information Content per bp:1.799
Number of Target Sequences with motif833.0
Percentage of Target Sequences with motif27.77%
Number of Background Sequences with motif327.1
Percentage of Background Sequences with motif12.10%
Average Position of motif in Targets37.3 +/- 20.0bp
Average Position of motif in Background38.5 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-CAGGAAGT-
ACAGGAAGTG

Eip74EF/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CAGGAAGT
CAGGAAGT

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--CAGGAAGT
NACAGGAAAT

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--CAGGAAGT
NACAGGAAAT

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CAGGAAGT
AACAGGAAGT

Eip74EF/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CAGGAAGT
AACAGGAAGT

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CAGGAAGT
AVCAGGAAGT

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-CAGGAAGT-
ACAGGAAGTG

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:9
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--CAGGAAGT--
NDCAGGAARTNN

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:10
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--CAGGAAGT
AACCGGAAGT