Information for 5-AAGATCTG (Motif 5)


Reverse Opposite:

p-value:1e-39
log p-value:-9.096e+01
Information Content per bp:1.808
Number of Target Sequences with motif486.0
Percentage of Target Sequences with motif16.20%
Number of Background Sequences with motif147.5
Percentage of Background Sequences with motif5.46%
Average Position of motif in Targets37.2 +/- 20.4bp
Average Position of motif in Background35.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CCA1/MA0972.1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-AAGATCTG
AAATATCT-

GATA11/MA1014.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AAGATCTG
TAGATCTG

GATA9/MA1018.1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--AAGATCTG-
TCTAGATCTGT

ECM23/MA0293.1/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AAGATCTG--
AAAGATCTAAA

GAT4/MA0302.1/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AAGATCTG--
AAAGATCTAAA

GATA10/MA1013.1/Jaspar

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AAGATCTG
TAGATCTG

LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer

Match Rank:7
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AAGATCTG
ADAAATATCT-

AGP1(GATA)/Nicotiana tabacum/AthaMap

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AAGATCTG-
NTAGATCTGA

GATA12/MA1015.1/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAGATCTG
TAGATCTA

SRD1/MA0389.1/Jaspar

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AAGATCTG-
-AGATCTAC