Information for 6-CCCTRGGGCW (Motif 7)


Reverse Opposite:

p-value:1e-21
log p-value:-4.879e+01
Information Content per bp:1.606
Number of Target Sequences with motif351.0
Percentage of Target Sequences with motif11.70%
Number of Background Sequences with motif129.9
Percentage of Background Sequences with motif4.81%
Average Position of motif in Targets37.3 +/- 19.0bp
Average Position of motif in Background33.5 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B/MA0811.1/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CCCTRGGGCW
TGCCCCAGGGCA

TFAP2C/MA0524.2/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CCCTRGGGCW
TGCCCCAGGGCA

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:3
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CCCTRGGGCW
TGCCCCCGGGCA

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:4
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CCCTRGGGCW-
TTGCCCTAGGGCAT

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CCCTRGGGCW
GTCCCCAGGGGA-

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCCTRGGGCW
NGTCCCNNGGGA-

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCCTRGGGCW
ATGCCCTGAGGC-

EBF1/MA0154.3/Jaspar

Match Rank:8
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CCCTRGGGCW-
ANTCCCTNGGGAAT

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CCCTRGGGCW-
SCCTSAGGSCAW

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:10
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---CCCTRGGGCW-
CCGCCCAAGGGCAG