Information for 9-TGCTRGCA (Motif 9)


Reverse Opposite:

p-value:1e-15
log p-value:-3.477e+01
Information Content per bp:1.727
Number of Target Sequences with motif317.0
Percentage of Target Sequences with motif10.57%
Number of Background Sequences with motif133.6
Percentage of Background Sequences with motif4.94%
Average Position of motif in Targets37.9 +/- 18.1bp
Average Position of motif in Background37.5 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TGCTRGCA-
-CTTGGCAA

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGCTRGCA
ARNTGACA

slbo/dmmpmm(Bigfoot)/fly

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCTRGCA--
TGATGGCAAA

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGCTRGCA--
VGCTGWCAVB

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGCTRGCA--
--YTGWCADY

FZF1/MA0298.1/Jaspar

Match Rank:6
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGCTRGCA
--CTATCA

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCTRGCA--
NNTTGGCANN

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCTRGCA-
GGTTGGCAT

caup/MA0217.1/Jaspar

Match Rank:9
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TGCTRGCA
---TAACA

Vis/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGCTRGCA--
ANNTGACAGN