Information for 1-KCTATTTTTRGM (Motif 1)


Reverse Opposite:

p-value:1e-279
log p-value:-6.429e+02
Information Content per bp:1.728
Number of Target Sequences with motif1446.0
Percentage of Target Sequences with motif48.20%
Number of Background Sequences with motif202.0
Percentage of Background Sequences with motif7.42%
Average Position of motif in Targets39.1 +/- 16.3bp
Average Position of motif in Background39.3 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:KCTATTTTTRGM
KCTATTTTTRGH

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:KCTATTTTTRGM
GCTATTTTTAGC

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-KCTATTTTTRGM--
TTCTATTTTTAGNNN

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.96
Offset:0
Orientation:forward strand
Alignment:KCTATTTTTRGM
GCTATTTTTGGM

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:KCTATTTTTRGM
-CTATTTTTGG-

MEF2A/MA0052.3/Jaspar

Match Rank:6
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:KCTATTTTTRGM
TCTATTTTTAGA

MEF2D/MA0773.1/Jaspar

Match Rank:7
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:KCTATTTTTRGM
TCTATTTATAGN

MEF2B/MA0660.1/Jaspar

Match Rank:8
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:KCTATTTTTRGM
GCTATTTATAGC

Mef2/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:KCTATTTTTRGM
-TTATTTTTAG-

RLM1(MacIsaac)/Yeast

Match Rank:10
Score:0.82
Offset:2
Orientation:forward strand
Alignment:KCTATTTTTRGM
--TATTTATAGA