Information for 19-CAVCTGCWGC (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-2.042e+01
Information Content per bp:1.684
Number of Target Sequences with motif107.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif32.7
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets40.2 +/- 18.6bp
Average Position of motif in Background42.7 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GCW-triplet

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CAVCTGCWGC-
GCAGCAGCAGCA

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CAVCTGCWGC
CAGCAGCTGN

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-CAVCTGCWGC-
NNAGCAGCTGCT

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CAVCTGCWGC-
-AGCAGCTGCT

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CAVCTGCWGC
-ANCAGCTG-

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CAVCTGCWGC-----
CTCAGCAGCTGCTACTG

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAVCTGCWGC--
-AACAGCTGCAG

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAVCTGCWGC
-AACAGCTG-

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CAVCTGCWGC--
-GACAGCTGCAG

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAVCTGCWGC
BAACAGCTGT