Information for 20-CCAGCCCTCA (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.761e+01
Information Content per bp:1.825
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets34.6 +/- 19.7bp
Average Position of motif in Background20.7 +/- 6.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCAGCCCTCA
CCAGCA----

ACE2/MA0267.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCAGCCCTCA
ACCAGCA----

TBF1/MA0403.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCAGCCCTCA
--AACCCTAA

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCAGCCCTCA
CNAGGCCT--

SWI5/MA0402.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCCCTCA
AACCAGCA----

SWI5(MacIsaac)/Yeast

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCCCTCA
AACCAGCA----

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCAGCCCTCA
-CTGCCCGCA

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCAGCCCTCA--
ATCCCCGCCCCTAAAA

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGCCCTCA
CTAGGCCT--

Unknown2/Drosophila-Promoters/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCAGCCCTCA
-CATCMCTA-