Information for 7-GAGAGAGAGAGA (Motif 18)


Reverse Opposite:

p-value:1e-3
log p-value:-7.016e+00
Information Content per bp:1.797
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets36.3 +/- 18.5bp
Average Position of motif in Background46.7 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl/dmmpmm(Down)/fly

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGAGA
GAGAGAGAGAGC

SeqBias: GA-repeat

Match Rank:2
Score:0.91
Offset:2
Orientation:forward strand
Alignment:GAGAGAGAGAGA
--GAGAGAGAGA

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:3
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAGAGA-
GAGAGAGARAGARAG

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGAGA--
GAGAGAGAGAGCAA

Trl/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGAGAGA
AGAGAGAGAGNAA

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:6
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GAGAGAGAGAGA
-RGAGAGAGAG-

eor-1/MA0543.1/Jaspar

Match Rank:7
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GAGAGAGAGAGA
AGAGAGACGCAGAGA

Trl/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.78
Offset:2
Orientation:forward strand
Alignment:GAGAGAGAGAGA
--GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:9
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:GAGAGAGAGAGA
--GAGAGAGCAA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GAGAGAGAGAGA
---RGAGAGAG-