Information for 4-KBTGTGGTTD (Motif 3)


Reverse Opposite:

p-value:1e-56
log p-value:-1.291e+02
Information Content per bp:1.662
Number of Target Sequences with motif587.0
Percentage of Target Sequences with motif19.57%
Number of Background Sequences with motif159.6
Percentage of Background Sequences with motif5.86%
Average Position of motif in Targets38.0 +/- 19.4bp
Average Position of motif in Background34.1 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-KBTGTGGTTD
GTCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-KBTGTGGTTD-
NNHTGTGGTTWN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:KBTGTGGTTD
NNTGTGGTTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:KBTGTGGTTD-
-CTGTGGTTTN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:forward strand
Alignment:KBTGTGGTTD
GCTGTGGTTT

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:KBTGTGGTTD
TTTGCGGTTT

MET28/MA0332.1/Jaspar

Match Rank:7
Score:0.86
Offset:1
Orientation:forward strand
Alignment:KBTGTGGTTD
-CTGTGG---

MET28(MacIsaac)/Yeast

Match Rank:8
Score:0.86
Offset:1
Orientation:forward strand
Alignment:KBTGTGGTTD
-CTGTGG---

RUNX2/MA0511.2/Jaspar

Match Rank:9
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:KBTGTGGTTD
-TTGCGGTTT

MET32/MA0334.1/Jaspar

Match Rank:10
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:KBTGTGGTTD
--TGTGGCG-