Information for 12-GAGGTCACAG (Motif 13)


Reverse Opposite:

p-value:1e-7
log p-value:-1.636e+01
Information Content per bp:1.662
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.39%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets39.7 +/- 21.0bp
Average Position of motif in Background30.6 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GAGGTCACAG
AAGGTCAC--

RTG3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GAGGTCACAG
--GGTCAC--

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GAGGTCACAG
-AGGTCA---

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCACAG-
CAAAGGTCAAGGG

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GAGGTCACAG
ATCAAGGTCA---

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GAGGTCACAG
TCAAGGTCAN--

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAGGTCACAG----
GAGGTCAAAGGTCA

NR2C2/MA0504.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCACAG----
AGGGGTCAGAGGTCA

usp/MA0016.1/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GAGGTCACAG
GGGGTCACGG

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTCACAG--
NTNNNGGGGTCANGNNN