Information for 3-GMAACCACAD (Motif 3)


Reverse Opposite:

p-value:1e-30
log p-value:-6.982e+01
Information Content per bp:1.570
Number of Target Sequences with motif294.0
Percentage of Target Sequences with motif34.79%
Number of Background Sequences with motif74.3
Percentage of Background Sequences with motif10.48%
Average Position of motif in Targets36.7 +/- 20.0bp
Average Position of motif in Background32.6 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GMAACCACAD-
-AAACCACANN

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:GMAACCACAD--
-AAACCACAGAN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GMAACCACAD
NAAACCACAG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GMAACCACAD--
NWAACCACADNN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:GMAACCACAD-
-AAACCACAGC

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GMAACCACAD-
-AAACCGCAAA

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.82
Offset:1
Orientation:forward strand
Alignment:GMAACCACAD
-AAACCGCAA

MET32/MA0334.1/Jaspar

Match Rank:8
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GMAACCACAD
--CGCCACA-

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.79
Offset:2
Orientation:forward strand
Alignment:GMAACCACAD
--ATCCAC--

MET28/MA0332.1/Jaspar

Match Rank:10
Score:0.79
Offset:4
Orientation:reverse strand
Alignment:GMAACCACAD
----CCACAG