Information for 7-CTGAMAGCWG (Motif 9)


Reverse Opposite:

p-value:1e-12
log p-value:-2.970e+01
Information Content per bp:1.651
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif7.22%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets38.2 +/- 21.1bp
Average Position of motif in Background29.2 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF1/MA0796.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGAMAGCWG---
-TGACAGCTGTCA

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGAMAGCWG
--AACAGCTG

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGAMAGCWG---
---HCAGCTGDTN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CTGAMAGCWG--
----CAGCTGNT

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGAMAGCWG---
--GACAGCTGCAG

Tcf12/MA0521.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGAMAGCWG---
--AACAGCTGCAG

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTGAMAGCWG---
---NCAGCTGCTG

PL0019.1_hlh-1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTGAMAGCWG----
NNNCGACAGCTGTCNN

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTGAMAGCWG---
---VCAGCTGBNN

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGAMAGCWG--
NNVVCAGCTGBN