Homer Known Motif Enrichment Results (/Volumes/Macintosh_HD/Users/zhengao/bio/Struc_features/in_data/chip-seq/1_narowPeaks/more/data/9_homer_out/49/TFI/)

Rank	Motif	Name	P-value	log P-pvalue	q-value (Benjamini)	# Target Sequences with Motif	% of Targets Sequences with Motif	# Background Sequences with Motif	% of Background Sequences with Motif	Motif File	PDF
1		AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	1e-23	-5.393e+01	0.0000	128.0	15.15%	11.0	1.56%	motif file (matrix)	pdf
2		BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	1e-22	-5.276e+01	0.0000	123.0	14.56%	10.4	1.46%	motif file (matrix)	pdf
3		Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	1e-21	-5.043e+01	0.0000	116.0	13.73%	9.5	1.34%	motif file (matrix)	pdf
4		Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	1e-20	-4.829e+01	0.0000	106.0	12.54%	7.3	1.02%	motif file (matrix)	pdf
5		Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	1e-19	-4.556e+01	0.0000	87.0	10.30%	3.4	0.48%	motif file (matrix)	pdf
6		Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	1e-18	-4.332e+01	0.0000	69.0	8.17%	0.6	0.08%	motif file (matrix)	pdf
7		RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	1e-17	-4.134e+01	0.0000	137.0	16.21%	23.3	3.28%	motif file (matrix)	pdf
8		Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	1e-17	-4.116e+01	0.0000	163.0	19.29%	35.5	5.01%	motif file (matrix)	pdf
9		RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	1e-16	-3.898e+01	0.0000	123.0	14.56%	19.5	2.75%	motif file (matrix)	pdf
10		Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	1e-14	-3.339e+01	0.0000	105.0	12.43%	16.8	2.37%	motif file (matrix)	pdf
11		Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	1e-14	-3.291e+01	0.0000	70.0	8.28%	4.9	0.69%	motif file (matrix)	pdf
12		RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	1e-14	-3.261e+01	0.0000	113.0	13.37%	20.7	2.91%	motif file (matrix)	pdf
13		Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	1e-12	-2.951e+01	0.0000	122.0	14.44%	27.9	3.94%	motif file (matrix)	pdf
14		RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	1e-11	-2.561e+01	0.0000	103.0	12.19%	22.7	3.21%	motif file (matrix)	pdf
15		ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	1e-10	-2.516e+01	0.0000	74.0	8.76%	10.9	1.54%	motif file (matrix)	pdf
16		Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	1e-10	-2.362e+01	0.0000	43.0	5.09%	1.4	0.19%	motif file (matrix)	pdf
17		Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	1e-9	-2.195e+01	0.0000	82.0	9.70%	16.8	2.37%	motif file (matrix)	pdf
18		ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	1e-8	-2.018e+01	0.0000	97.0	11.48%	25.1	3.54%	motif file (matrix)	pdf
19		IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	1e-7	-1.722e+01	0.0000	84.0	9.94%	22.2	3.13%	motif file (matrix)	pdf
20		PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	1e-7	-1.709e+01	0.0000	99.0	11.72%	30.3	4.28%	motif file (matrix)	pdf
21		EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	1e-7	-1.696e+01	0.0000	42.0	4.97%	4.6	0.65%	motif file (matrix)	pdf
22		PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	1e-7	-1.642e+01	0.0000	41.0	4.85%	4.7	0.67%	motif file (matrix)	pdf
23		ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	1e-7	-1.642e+01	0.0000	84.0	9.94%	23.9	3.38%	motif file (matrix)	pdf
24		SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	1e-6	-1.579e+01	0.0000	30.0	3.55%	2.0	0.28%	motif file (matrix)	pdf
25		PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	1e-5	-1.319e+01	0.0000	29.0	3.43%	2.5	0.36%	motif file (matrix)	pdf
26		USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	1e-5	-1.261e+01	0.0000	31.0	3.67%	4.0	0.56%	motif file (matrix)	pdf
27		CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	1e-5	-1.242e+01	0.0001	41.0	4.85%	7.4	1.05%	motif file (matrix)	pdf
28		ETS(ETS)/Promoter/Homer	1e-5	-1.226e+01	0.0001	24.0	2.84%	2.0	0.28%	motif file (matrix)	pdf
29		Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	1e-5	-1.194e+01	0.0001	40.0	4.73%	7.4	1.05%	motif file (matrix)	pdf
30		Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	1e-5	-1.179e+01	0.0001	42.0	4.97%	8.9	1.26%	motif file (matrix)	pdf
31		Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	1e-5	-1.152e+01	0.0001	26.0	3.08%	2.4	0.34%	motif file (matrix)	pdf
32		ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	1e-4	-1.149e+01	0.0001	50.0	5.92%	12.5	1.77%	motif file (matrix)	pdf
33		Initiator/Drosophila-Promoters/Homer	1e-4	-1.147e+01	0.0001	177.0	20.95%	90.8	12.81%	motif file (matrix)	pdf
34		Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	1e-4	-1.146e+01	0.0001	56.0	6.63%	15.0	2.12%	motif file (matrix)	pdf
35		bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	1e-4	-1.086e+01	0.0002	64.0	7.57%	20.0	2.82%	motif file (matrix)	pdf
36		BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	1e-4	-1.068e+01	0.0002	88.0	10.41%	34.6	4.89%	motif file (matrix)	pdf
37		IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	1e-4	-1.042e+01	0.0003	24.0	2.84%	3.0	0.42%	motif file (matrix)	pdf
38		FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	1e-4	-1.042e+01	0.0003	17.0	2.01%	0.4	0.05%	motif file (matrix)	pdf
39		Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	1e-4	-9.803e+00	0.0005	16.0	1.89%	1.0	0.14%	motif file (matrix)	pdf
40		MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	1e-4	-9.436e+00	0.0008	43.0	5.09%	11.9	1.68%	motif file (matrix)	pdf
41		GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	1e-4	-9.348e+00	0.0008	58.0	6.86%	19.1	2.69%	motif file (matrix)	pdf
42		EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	1e-4	-9.240e+00	0.0009	70.0	8.28%	26.4	3.72%	motif file (matrix)	pdf
43		Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	1e-3	-9.132e+00	0.0010	163.0	19.29%	87.8	12.39%	motif file (matrix)	pdf
44		IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	1e-3	-8.801e+00	0.0013	21.0	2.49%	2.6	0.37%	motif file (matrix)	pdf
45		NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	1e-3	-8.570e+00	0.0016	14.0	1.66%	0.0	0.00%	motif file (matrix)	pdf
46		c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	1e-3	-8.439e+00	0.0018	23.0	2.72%	3.4	0.49%	motif file (matrix)	pdf
47		n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	1e-3	-8.234e+00	0.0022	40.0	4.73%	11.1	1.57%	motif file (matrix)	pdf
48		Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	1e-3	-7.936e+00	0.0029	22.0	2.60%	3.8	0.54%	motif file (matrix)	pdf
49		E-box/Arabidopsis-Promoters/Homer	1e-3	-7.824e+00	0.0032	37.0	4.38%	10.1	1.43%	motif file (matrix)	pdf
50		AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	1e-3	-7.765e+00	0.0033	94.0	11.12%	44.5	6.28%	motif file (matrix)	pdf
51		Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	1e-3	-7.605e+00	0.0038	104.0	12.31%	51.1	7.21%	motif file (matrix)	pdf
52		Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	1e-3	-7.582e+00	0.0038	26.0	3.08%	5.6	0.78%	motif file (matrix)	pdf
53		MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	1e-3	-7.582e+00	0.0038	26.0	3.08%	5.6	0.79%	motif file (matrix)	pdf
54		c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	1e-3	-7.497e+00	0.0040	40.0	4.73%	12.1	1.70%	motif file (matrix)	pdf
55		Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	1e-3	-7.494e+00	0.0040	28.0	3.31%	6.6	0.94%	motif file (matrix)	pdf
56		BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	1e-3	-7.362e+00	0.0044	97.0	11.48%	47.2	6.66%	motif file (matrix)	pdf
57		SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	1e-3	-7.145e+00	0.0054	60.0	7.10%	24.0	3.39%	motif file (matrix)	pdf
58		SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	1e-2	-6.781e+00	0.0076	22.0	2.60%	4.7	0.67%	motif file (matrix)	pdf
59		Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	1e-2	-6.725e+00	0.0079	11.0	1.30%	0.0	0.00%	motif file (matrix)	pdf
60		Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	1e-2	-6.661e+00	0.0083	34.0	4.02%	10.4	1.46%	motif file (matrix)	pdf
61		ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	1e-2	-6.629e+00	0.0084	26.0	3.08%	6.1	0.86%	motif file (matrix)	pdf
62		Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	1e-2	-6.563e+00	0.0085	14.0	1.66%	1.1	0.16%	motif file (matrix)	pdf
63		E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	1e-2	-6.563e+00	0.0085	14.0	1.66%	1.1	0.16%	motif file (matrix)	pdf
64		E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	1e-2	-6.563e+00	0.0085	14.0	1.66%	1.7	0.24%	motif file (matrix)	pdf
65		PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	1e-2	-6.429e+00	0.0096	51.0	6.04%	20.6	2.90%	motif file (matrix)	pdf
66		PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	1e-2	-6.285e+00	0.0109	33.0	3.91%	10.7	1.51%	motif file (matrix)	pdf
67		ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	1e-2	-6.212e+00	0.0116	29.0	3.43%	8.7	1.23%	motif file (matrix)	pdf
68		HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	1e-2	-6.198e+00	0.0116	27.0	3.20%	7.2	1.02%	motif file (matrix)	pdf
69		PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	1e-2	-6.078e+00	0.0129	58.0	6.86%	25.3	3.57%	motif file (matrix)	pdf
70		SeqBias: CA-repeat	1e-2	-6.004e+00	0.0136	272.0	32.19%	181.8	25.65%	motif file (matrix)	pdf
71		FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	1e-2	-5.984e+00	0.0137	64.0	7.57%	29.8	4.21%	motif file (matrix)	pdf
72		MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	1e-2	-5.977e+00	0.0137	34.0	4.02%	11.7	1.64%	motif file (matrix)	pdf
73		EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	1e-2	-5.951e+00	0.0138	41.0	4.85%	15.7	2.22%	motif file (matrix)	pdf
74		Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	1e-2	-5.680e+00	0.0178	15.0	1.78%	2.4	0.34%	motif file (matrix)	pdf
75		NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	1e-2	-5.497e+00	0.0212	9.0	1.07%	0.0	0.00%	motif file (matrix)	pdf
76		NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	1e-2	-5.465e+00	0.0215	12.0	1.42%	1.4	0.20%	motif file (matrix)	pdf
77		SeqBias: CG-repeat	1e-2	-5.452e+00	0.0216	109.0	12.90%	61.2	8.64%	motif file (matrix)	pdf
78		Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	1e-2	-5.298e+00	0.0248	69.0	8.17%	34.1	4.81%	motif file (matrix)	pdf
79		MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	1e-2	-5.288e+00	0.0248	111.0	13.14%	63.8	9.00%	motif file (matrix)	pdf
80		ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	1e-2	-5.181e+00	0.0272	14.0	1.66%	2.3	0.32%	motif file (matrix)	pdf
81		KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	1e-2	-5.179e+00	0.0272	50.0	5.92%	22.3	3.14%	motif file (matrix)	pdf
82		IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	1e-2	-5.156e+00	0.0272	89.0	10.53%	48.4	6.83%	motif file (matrix)	pdf
83		IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	1e-2	-5.129e+00	0.0276	28.0	3.31%	9.7	1.37%	motif file (matrix)	pdf
84		SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	1e-2	-5.057e+00	0.0293	175.0	20.71%	111.8	15.77%	motif file (matrix)	pdf
85		ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	1e-2	-5.020e+00	0.0297	51.0	6.04%	23.1	3.26%	motif file (matrix)	pdf
86		FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	1e-2	-5.020e+00	0.0297	51.0	6.04%	23.4	3.30%	motif file (matrix)	pdf
87		Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	1e-2	-4.982e+00	0.0305	18.0	2.13%	4.8	0.68%	motif file (matrix)	pdf
88		KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	1e-2	-4.924e+00	0.0320	11.0	1.30%	1.6	0.22%	motif file (matrix)	pdf
89		E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.4	0.05%	motif file (matrix)	pdf
90		ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.3	0.04%	motif file (matrix)	pdf
91		CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.5	0.08%	motif file (matrix)	pdf
92		Unknown4/Drosophila-Promoters/Homer	1e-2	-4.884e+00	0.0320	8.0	0.95%	0.8	0.11%	motif file (matrix)	pdf
93		Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	1e-2	-4.852e+00	0.0325	143.0	16.92%	88.1	12.43%	motif file (matrix)	pdf
94		c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	1e-2	-4.702e+00	0.0374	25.0	2.96%	8.3	1.18%	motif file (matrix)	pdf
95		Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	1e-2	-4.689e+00	0.0375	13.0	1.54%	2.0	0.28%	motif file (matrix)	pdf
96		CHR(?)/Hela-CellCycle-Expression/Homer	1e-2	-4.616e+00	0.0399	40.0	4.73%	18.0	2.53%	motif file (matrix)	pdf