Information for 4-WAACCACA (Motif 3)


Reverse Opposite:

p-value:1e-94
log p-value:-2.184e+02
Information Content per bp:1.740
Number of Target Sequences with motif1016.0
Percentage of Target Sequences with motif33.87%
Number of Background Sequences with motif279.0
Percentage of Background Sequences with motif10.92%
Average Position of motif in Targets36.4 +/- 20.5bp
Average Position of motif in Background36.7 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:WAACCACA--
AAACCACANN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-WAACCACA---
NWAACCACADNN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-WAACCACA-
NAAACCACAG

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:WAACCACA---
AAACCACAGAN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:WAACCACA--
AAACCACAGC

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.87
Offset:0
Orientation:forward strand
Alignment:WAACCACA--
AAACCGCAAA

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:WAACCACA-
AAACCGCAA

MET32/MA0334.1/Jaspar

Match Rank:8
Score:0.84
Offset:1
Orientation:forward strand
Alignment:WAACCACA
-CGCCACA

MET31(MacIsaac)/Yeast

Match Rank:9
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:WAACCACA--
--GCCACACC

Bgb::run/MA0242.1/Jaspar

Match Rank:10
Score:0.82
Offset:0
Orientation:forward strand
Alignment:WAACCACA-
TAACCGCAA