Information for 13-AGCCCSGCGC (Motif 6)


Reverse Opposite:

p-value:1e-16
log p-value:-3.793e+01
Information Content per bp:1.834
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif3.10%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets37.4 +/- 19.8bp
Average Position of motif in Background45.0 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SUT1?/SacCer-Promoters/Homer

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:AGCCCSGCGC
--CCCCGCGC

SUT1(MacIsaac)/Yeast

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:AGCCCSGCGC
--CCCCGCG-

SUT1/MA0399.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AGCCCSGCGC
--CCCCGCG-

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGCCCSGCGC-
CGCCTCAGGCA

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGCCCSGCGC-
AGCCTCAGGCA

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGCCCSGCGC-
AGCCTCAGGCA

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGCCCSGCGC---
NNGCNCTGCGCGGC

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGCCCSGCGC--
GGCCCCGCCCCC

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGCCCSGCGC---
ATTGCCTGAGGCAAT

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCCCSGCGC
-GCCNGGGCC