Information for 1-CCWTTGTBWT (Motif 1)


Reverse Opposite:

p-value:1e-109
log p-value:-2.521e+02
Information Content per bp:1.590
Number of Target Sequences with motif1209.0
Percentage of Target Sequences with motif40.30%
Number of Background Sequences with motif293.2
Percentage of Background Sequences with motif13.06%
Average Position of motif in Targets37.4 +/- 19.0bp
Average Position of motif in Background38.7 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCWTTGTBWT
CCWTTGTY--

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCWTTGTBWT
CCWTTGTYYB

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCWTTGTBWT
NCCATTGTTY-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCWTTGTBWT
CCATTGTTNY

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCWTTGTBWT
CCTTTGTTTT

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCWTTGTBWT
CCTTTGTT--

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CCWTTGTBWT
CCATTGTTTT

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.88
Offset:1
Orientation:forward strand
Alignment:CCWTTGTBWT
-CTTTGT---

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----CCWTTGTBWT---
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----CCWTTGTBWT---
TNNTCCTTTGTTCTNNT