Information for 20-CCGCAGACAG (Motif 17)


Reverse Opposite:

p-value:1e-8
log p-value:-1.846e+01
Information Content per bp:1.662
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets28.8 +/- 20.1bp
Average Position of motif in Background26.9 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCGCAGACAG
--CCAGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CCGCAGACAG--
--CCAGACRSVB

sma-4/MA0925.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCGCAGACAG-
NNCCAGACANN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCGCAGACAG
--BCAGACWA

PDR1/MA0352.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCGCAGACAG
TCCGCGGA---

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCGCAGACAG----
CAAATCCAGACATCACA

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCGCAGACAG
CGCCCCCTGACA-

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGCAGACAG
-TGCAGGNA-

snpc-4/MA0544.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCGCAGACAG
AGCGGCCGACAC

MET28/MA0332.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCGCAGACAG
CCACAG----