Information for 1-CACAGCAGGRRG (Motif 2)


Reverse Opposite:

p-value:1e-82
log p-value:-1.897e+02
Information Content per bp:1.686
Number of Target Sequences with motif578.0
Percentage of Target Sequences with motif19.27%
Number of Background Sequences with motif65.7
Percentage of Background Sequences with motif2.93%
Average Position of motif in Targets38.7 +/- 17.9bp
Average Position of motif in Background38.1 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:forward strand
Alignment:CACAGCAGGRRG
CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.95
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGRRG
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGRRG
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CACAGCAGGRRG
GAGCACAGCAGGACA

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCAGGRRG
DCTCAGCAGG---

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CACAGCAGGRRG--
CACAGCGGGGGGTC

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCAGGRRG--
NCGCAGCGGGGGGTC

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCAGGRRG--
NCNCAGCGGGGGGTC

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CACAGCAGGRRG
NAACAGCTGG---

PHD1/PHD1_BUT90/8-SUT1(Harbison)/Yeast

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CACAGCAGGRRG
-GCCGCAGG---