Information for 25-CCATTCAGGC (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.157e+01
Information Content per bp:1.527
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets40.6 +/- 20.0bp
Average Position of motif in Background42.4 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCATTCAGGC----
ACATTCATGACACG

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CCATTCAGGC---
GACCACATTCATACAAT

SIP4/SIP4_SM/9-SIP4(Harbison)/Yeast

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCATTCAGGC-
TTCCATTCANCCG

Tup/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCATTCAGGC
TCAATTAAGG-

SIP4(MacIsaac)/Yeast

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCATTCAGGC---
CTCCATTCANCCGAG

RPH1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATTCAGGC
CCCCTTAAGG-

RPH1(MacIsaac)/Yeast

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATTCAGGC
CCCCTTAAGG-

HAP4(MacIsaac)/Yeast

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCATTCAGGC----
ACCAATCAGNNNCGA

pho/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCATTCAGGC
GCCATT-----

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CCATTCAGGC
AAATGGACCAATCAG--