Information for 2-DRRGCMATTARS (Motif 3)


Reverse Opposite:

p-value:1e-60
log p-value:-1.399e+02
Information Content per bp:1.544
Number of Target Sequences with motif832.0
Percentage of Target Sequences with motif27.73%
Number of Background Sequences with motif221.7
Percentage of Background Sequences with motif9.87%
Average Position of motif in Targets37.5 +/- 17.6bp
Average Position of motif in Background36.6 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.92
Offset:2
Orientation:forward strand
Alignment:DRRGCMATTARS
--GGCCATTAAC

ftz/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:DRRGCMATTARS
--GNCAATTA--

ftz/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:DRRGCMATTARS
--GNCCATTAA-

HOXB3/MA0903.1/Jaspar

Match Rank:4
Score:0.86
Offset:2
Orientation:forward strand
Alignment:DRRGCMATTARS
--ACTAATTAGC

HOXB2/MA0902.1/Jaspar

Match Rank:5
Score:0.85
Offset:2
Orientation:forward strand
Alignment:DRRGCMATTARS
--AGTAATTAAC

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:DRRGCMATTARS
---BCMATTAG-

EN2/MA0642.1/Jaspar

Match Rank:7
Score:0.84
Offset:2
Orientation:forward strand
Alignment:DRRGCMATTARS
--CCCAATTAGC

Nobox/MA0125.1/Jaspar

Match Rank:8
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:DRRGCMATTARS
--ACCAATTA--

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:DRRGCMATTARS
--NNCAATTANN

HOXA2/MA0900.1/Jaspar

Match Rank:10
Score:0.84
Offset:2
Orientation:forward strand
Alignment:DRRGCMATTARS
--CCTAATTACC