Information for 3-AAATGCAAAT (Motif 4)


Reverse Opposite:

p-value:1e-49
log p-value:-1.131e+02
Information Content per bp:1.590
Number of Target Sequences with motif626.0
Percentage of Target Sequences with motif20.87%
Number of Background Sequences with motif151.7
Percentage of Background Sequences with motif6.76%
Average Position of motif in Targets36.8 +/- 19.6bp
Average Position of motif in Background38.2 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.93
Offset:1
Orientation:forward strand
Alignment:AAATGCAAAT---
-TATGCWAATBAV

Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.91
Offset:1
Orientation:forward strand
Alignment:AAATGCAAAT---
-WATGCAAATGAG

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:AAATGCAAAT
TTATGCAAAT

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:AAATGCAAAT---
ATATGCAAATNNN

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.90
Offset:1
Orientation:forward strand
Alignment:AAATGCAAAT
-TATGCAAAT

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.88
Offset:0
Orientation:forward strand
Alignment:AAATGCAAAT
ATATGCAAAT

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.88
Offset:0
Orientation:forward strand
Alignment:AAATGCAAAT--
TTATGCAAATTA

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-AAATGCAAAT-
AATATGCAAATT

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.87
Offset:1
Orientation:forward strand
Alignment:AAATGCAAAT
-TATGCAAAT

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--AAATGCAAAT----
TTGTATGCAAATTAGA